Detailed information NTG0024199

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LPL_RS06255
• Genome accession: NC_006369
• Coordinates: 1390104..1391129 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila str. Lens
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1385104..1396129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPL_RS06225 (lpl1241)	-	1385534..1385851 (+)	318	WP_011215326.1	DUF2845 domain-containing protein	-
LPL_RS06230 (lpl1242)	-	1385889..1386260 (+)	372	WP_011215327.1	protease inhibitor I42 family protein	-
LPL_RS06235 (lpl1243)	-	1386317..1388032 (-)	1716	WP_011215328.1	NAD-dependent malic enzyme	-
LPL_RS06240 (lpl1244)	-	1388112..1388495 (+)	384	WP_011215329.1	hypothetical protein	-
LPL_RS06245 (lpl1245)	surE	1388498..1389256 (+)	759	WP_011215330.1	5'/3'-nucleotidase SurE	-
LPL_RS06250 (lpl1246)	-	1389275..1390018 (+)	744	WP_011215331.1	peptidoglycan DD-metalloendopeptidase family protein	-
LPL_RS06255 (lpl1247)	rpoS	1390104..1391129 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
LPL_RS06260 (lpl1248)	hmgA	1391232..1392482 (-)	1251	WP_011215332.1	homogentisate 1,2-dioxygenase	-
LPL_RS06265 (lpl1249)	-	1392629..1393372 (+)	744	WP_011215333.1	YebC/PmpR family DNA-binding transcriptional regulator	-
LPL_RS06270 (lpl1250)	ruvC	1393372..1393896 (+)	525	WP_011215334.1	crossover junction endodeoxyribonuclease RuvC	-
LPL_RS06275 (lpl1251)	ruvA	1393893..1394492 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
LPL_RS06280 (lpl1252)	-	1394543..1394863 (+)	321	WP_011215335.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=24199 LPL_RS06255 WP_011213596.1 1390104..1391129(+) (rpoS) [Legionella pneumophila str. Lens]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=24199 LPL_RS06255 WP_011213596.1 1390104..1391129(+) (rpoS) [Legionella pneumophila str. Lens]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCAACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGCTTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTATATCTCAGAGCGGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCGGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCCTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAAGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548