Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   CGP83_RS08010 Genome accession   NZ_CP022717
Coordinates   1603849..1604823 (-) Length   324 a.a.
NCBI ID   WP_115288402.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 27     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1598849..1609823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP83_RS07970 (CGP83_01468) gcvT 1599350..1600441 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  CGP83_RS07975 (CGP83_01469) - 1600600..1601124 (-) 525 WP_001015120.1 shikimate kinase -
  CGP83_RS07980 - 1601114..1601260 (-) 147 WP_001789879.1 hypothetical protein -
  CGP83_RS07985 (CGP83_01470) comGF 1601357..1601854 (-) 498 WP_115288401.1 competence type IV pilus minor pilin ComGF Machinery gene
  CGP83_RS07990 (CGP83_01471) comGE 1601772..1602071 (-) 300 WP_000844415.1 hypothetical protein Machinery gene
  CGP83_RS07995 (CGP83_01472) comGD 1602058..1602504 (-) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  CGP83_RS08000 (CGP83_01473) comGC 1602482..1602793 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  CGP83_RS08005 (CGP83_01474) comGB 1602807..1603877 (-) 1071 WP_000776413.1 competence type IV pilus assembly protein ComGB Machinery gene
  CGP83_RS08010 (CGP83_01475) comGA 1603849..1604823 (-) 975 WP_115288402.1 competence type IV pilus ATPase ComGA Machinery gene
  CGP83_RS08015 (CGP83_01476) - 1604875..1605498 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  CGP83_RS08020 (CGP83_01477) - 1605495..1605824 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CGP83_RS08025 (CGP83_01478) - 1605824..1606810 (-) 987 WP_000161315.1 ROK family glucokinase -
  CGP83_RS08030 - 1606807..1607010 (-) 204 WP_000087561.1 YqgQ family protein -
  CGP83_RS08035 (CGP83_01479) - 1606991..1608454 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  CGP83_RS08040 (CGP83_01480) - 1608466..1609005 (-) 540 WP_000164552.1 5-formyltetrahydrofolate cyclo-ligase -
  CGP83_RS08045 (CGP83_01481) rpmG 1609214..1609363 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36901.00 Da        Isoelectric Point: 8.8508

>NTDB_id=241863 CGP83_RS08010 WP_115288402.1 1603849..1604823(-) (comGA) [Staphylococcus aureus strain 27]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSNNHLLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=241863 CGP83_RS08010 WP_115288402.1 1603849..1604823(-) (comGA) [Staphylococcus aureus strain 27]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTAATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCTACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAAGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCAATAATCATT
TATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.383

100

0.994
  comGA Staphylococcus aureus N315

99.383

100

0.994

Multiple sequence alignment