Detailed information NTG0241817

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DBA97_RS07855
• Genome accession: NZ_CP028584
• Coordinates: 1670678..1671682 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain WCHPA075019
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1665678..1676682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBA97_RS07825 (DBA97_07825)	fghA	1665770..1666621 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
DBA97_RS07830 (DBA97_07830)	ispF	1666692..1667165 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DBA97_RS07835 (DBA97_07835)	truD	1667162..1668229 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
DBA97_RS07840 (DBA97_07840)	surE	1668217..1668966 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
DBA97_RS07845 (DBA97_07845)	-	1668999..1669634 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
DBA97_RS07850 (DBA97_07850)	-	1669680..1670573 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
DBA97_RS07855 (DBA97_07855)	rpoS	1670678..1671682 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
DBA97_RS07860 (DBA97_07860)	fdxA	1672108..1672431 (-)	324	WP_003119354.1	ferredoxin FdxA	-
DBA97_RS07865 (DBA97_07865)	mutS	1672498..1675065 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
DBA97_RS07875 (DBA97_07875)	-	1675191..1676198 (-)	1008	WP_003117491.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=241817 DBA97_RS07855 WP_003113871.1 1670678..1671682(+) (rpoS) [Pseudomonas aeruginosa strain WCHPA075019]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=241817 DBA97_RS07855 WP_003113871.1 1670678..1671682(+) (rpoS) [Pseudomonas aeruginosa strain WCHPA075019]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653