Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   ABC_RS13295 Genome accession   NC_006582
Coordinates   2668224..2668406 (-) Length   60 a.a.
NCBI ID   WP_035201913.1    Uniprot ID   -
Organism   Shouchella clausii KSM-K16     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 2663224..2673406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC_RS13275 (ABC2545) - 2664984..2665188 (-) 205 Protein_2625 helix-turn-helix domain-containing protein -
  ABC_RS13280 (ABC2546) fabF 2665339..2666580 (-) 1242 WP_011247389.1 beta-ketoacyl-ACP synthase II -
  ABC_RS13285 (ABC2547) - 2666628..2667563 (-) 936 WP_011247390.1 beta-ketoacyl-ACP synthase III -
  ABC_RS13290 - 2667758..2668027 (+) 270 WP_041823891.1 hypothetical protein -
  ABC_RS13295 comZ 2668224..2668406 (-) 183 WP_035201913.1 ComZ family protein Regulator
  ABC_RS13300 (ABC2549) - 2668552..2670159 (+) 1608 WP_011247392.1 peptide chain release factor 3 -
  ABC_RS13305 (ABC2550) - 2670215..2671054 (-) 840 WP_011247393.1 NAD-dependent epimerase/dehydratase family protein -
  ABC_RS21570 (ABC2551) - 2671108..2671800 (-) 693 WP_011247394.1 hypothetical protein -
  ABC_RS13315 (ABC2552) argF 2671944..2672888 (-) 945 WP_011247395.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 7018.17 Da        Isoelectric Point: 4.5738

>NTDB_id=24180 ABC_RS13295 WP_035201913.1 2668224..2668406(-) (comZ) [Shouchella clausii KSM-K16]
MEQHERNLKFMEIAMKHVPEARKLLEGKGIEVTMDELQPLLSLLLHVMNEAYELGLNEQE

Nucleotide


Download         Length: 183 bp        

>NTDB_id=24180 ABC_RS13295 WP_035201913.1 2668224..2668406(-) (comZ) [Shouchella clausii KSM-K16]
ATGGAGCAACACGAAAGAAATTTGAAGTTTATGGAAATCGCCATGAAGCATGTACCTGAAGCGCGTAAATTGCTAGAAGG
CAAAGGCATAGAAGTAACAATGGATGAATTGCAGCCGCTGCTTTCATTGTTGCTTCATGTGATGAACGAAGCATACGAAC
TTGGGTTAAACGAGCAGGAATGA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

51.786

93.333

0.483

Multiple sequence alignment