Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CI104_RS09260 Genome accession   NZ_CP022695
Coordinates   1893283..1893912 (+) Length   209 a.a.
NCBI ID   WP_042319983.1    Uniprot ID   A0A8H9TU51
Organism   Citrobacter farmeri strain AUSMDU00008141     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888283..1898912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CI104_RS09240 (CI104_09240) - 1888662..1890422 (-) 1761 WP_042319993.1 AAA family ATPase -
  CI104_RS09245 (CI104_09245) matP 1890608..1891060 (+) 453 WP_042319990.1 macrodomain Ter protein MatP -
  CI104_RS09250 (CI104_09250) ompA 1891144..1892199 (-) 1056 WP_042319987.1 porin OmpA -
  CI104_RS09255 (CI104_09255) sulA 1892556..1893065 (-) 510 WP_042319986.1 SOS-induced cell division inhibitor SulA -
  CI104_RS09260 (CI104_09260) sxy/tfoX 1893283..1893912 (+) 630 WP_042319983.1 TfoX/Sxy family DNA transformation protein Regulator
  CI104_RS09265 (CI104_09265) yccS 1893866..1896028 (-) 2163 WP_094465132.1 YccS family putative transporter -
  CI104_RS09270 (CI104_09270) - 1896047..1896493 (-) 447 WP_042319980.1 YccF domain-containing protein -
  CI104_RS09275 (CI104_09275) helD 1896617..1898671 (+) 2055 WP_042319976.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24185.15 Da        Isoelectric Point: 9.2625

>NTDB_id=241746 CI104_RS09260 WP_042319983.1 1893283..1893912(+) (sxy/tfoX) [Citrobacter farmeri strain AUSMDU00008141]
MKVHSYDRIYKSQEYLSSLGTIHFRSLFGSYSLTIKNTVFAMVANGELYLRACEQSVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDESLWRDQQQLIQLSKFSLDAALQEKLTRCSQQRLKDLPNMTFHLESLLNDAGIYDVATLRMLGAKMCWLRLRQMN
KSITDKVLFNLEGAIYGIHEAALPAIRRQELALWVKSLSPALVSVEKIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=241746 CI104_RS09260 WP_042319983.1 1893283..1893912(+) (sxy/tfoX) [Citrobacter farmeri strain AUSMDU00008141]
ATGAAAGTACACTCCTATGACAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATCCATTTCCGTTCACT
GTTCGGCAGCTACAGTCTGACTATCAAGAATACCGTCTTTGCGATGGTCGCGAATGGTGAGCTTTATCTGCGTGCCTGTG
AGCAAAGCGTACAGTATTGTGTGCAGCATTCTCCAGTATGGCTGACATTTCTTAAACGCGGGCGTCCGGTCATGCTCAAC
TATTATCAGGTTGATGAAAGTCTTTGGCGCGACCAACAACAGTTGATCCAGTTATCGAAGTTTTCGCTGGATGCCGCGTT
ACAGGAGAAGTTGACTCGCTGTTCTCAGCAGCGTCTTAAGGATCTCCCCAATATGACCTTTCATCTGGAGAGTTTGCTGA
ATGACGCGGGGATCTACGACGTCGCCACTCTGCGTATGCTGGGGGCTAAAATGTGCTGGTTGCGACTTCGACAGATGAAT
AAATCCATCACTGACAAGGTGCTTTTTAATCTTGAAGGGGCCATTTATGGCATTCATGAAGCGGCGCTCCCGGCGATACG
TCGCCAGGAGCTTGCTCTGTGGGTTAAGTCGCTTTCGCCGGCGCTGGTGTCTGTGGAGAAGATTGAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.5

95.694

0.684

Multiple sequence alignment