Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LPP_RS13320 Genome accession   NC_006368
Coordinates   3010900..3011691 (-) Length   263 a.a.
NCBI ID   WP_014844714.1    Uniprot ID   -
Organism   Legionella pneumophila str. Paris     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005900..3016691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPP_RS13310 (lpp2641) legS1 3007047..3008204 (-) 1158 WP_015961696.1 Dot/Icm T4SS effector LegS1 -
  LPP_RS13315 (lpp2642) dacB 3009015..3010808 (-) 1794 WP_014844713.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine endopeptidase -
  LPP_RS13320 (lpp2643) spo0J 3010900..3011691 (-) 792 WP_014844714.1 ParB/RepB/Spo0J family partition protein Regulator
  LPP_RS13325 (lpp2644) ceg33 3011808..3012311 (-) 504 WP_014844715.1 Dot/Icm T4SS effector Ceg33 -
  LPP_RS13330 (lpp2645) - 3012484..3013233 (-) 750 WP_014842652.1 CPBP family glutamic-type intramembrane protease -
  LPP_RS13335 (lpp2646) rsmB 3013230..3014513 (-) 1284 WP_015961697.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LPP_RS13340 (lpp2647) fmt 3014510..3015454 (-) 945 WP_015961698.1 methionyl-tRNA formyltransferase -
  LPP_RS13345 (lpp2648) def 3015451..3015963 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30113.25 Da        Isoelectric Point: 5.7320

>NTDB_id=24167 LPP_RS13320 WP_014844714.1 3010900..3011691(-) (spo0J) [Legionella pneumophila str. Paris]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAHQIIGEEWSVRYLEQEIKSYKNKDTNSPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=24167 LPP_RS13320 WP_014844714.1 3010900..3011691(-) (spo0J) [Legionella pneumophila str. Paris]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCCTTGGTGGTAAGACCTATAGCAAAAGAGC
GATATGAAATTATTGCGGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATCGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCCTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTGTTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAACAGCAAGAAATGTTTGCTCACCAGATTATTGGAGAGGAATGGTCTGT
CAGATACTTAGAGCAAGAAATTAAATCTTATAAAAATAAAGATACGAACAGTCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.692

98.859

0.373