Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C5Y81_RS07420 Genome accession   NZ_CP028470
Coordinates   1519992..1521671 (-) Length   559 a.a.
NCBI ID   WP_000942213.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT4-R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1514992..1526671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y81_RS07400 (C5Y81_07400) - 1515142..1516416 (-) 1275 WP_000406858.1 dihydrolipoamide acetyltransferase family protein -
  C5Y81_RS07405 (C5Y81_07405) - 1516429..1517412 (-) 984 WP_001096642.1 alpha-ketoacid dehydrogenase subunit beta -
  C5Y81_RS07410 (C5Y81_07410) - 1517412..1518404 (-) 993 WP_052997591.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  C5Y81_RS07415 (C5Y81_07415) lpdA 1518420..1519841 (-) 1422 WP_045177137.1 dihydrolipoyl dehydrogenase -
  C5Y81_RS07420 (C5Y81_07420) recN 1519992..1521671 (-) 1680 WP_000942213.1 DNA repair protein RecN Machinery gene
  C5Y81_RS07425 (C5Y81_07425) argR 1521687..1522139 (-) 453 WP_001124985.1 transcriptional regulator ArgR -
  C5Y81_RS07430 (C5Y81_07430) - 1522570..1523451 (-) 882 WP_000183376.1 polyprenyl synthetase family protein -
  C5Y81_RS07435 (C5Y81_07435) - 1523429..1523659 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  C5Y81_RS07440 (C5Y81_07440) xseA 1523652..1524989 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  C5Y81_RS07445 (C5Y81_07445) nusB 1525006..1525395 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  C5Y81_RS07450 (C5Y81_07450) - 1525455..1525817 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64281.84 Da        Isoelectric Point: 4.7316

>NTDB_id=241592 C5Y81_RS07420 WP_000942213.1 1519992..1521671(-) (recN) [Staphylococcus aureus strain IT4-R]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELISYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=241592 C5Y81_RS07420 WP_000942213.1 1519992..1521671(-) (recN) [Staphylococcus aureus strain IT4-R]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACACCTAAAAGAAGGTGAAATAGAGCAACTTG
AAATTGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCACTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCTCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGCTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCTGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44

Multiple sequence alignment