Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   C5Y81_RS01605 Genome accession   NZ_CP028470
Coordinates   357498..358343 (+) Length   281 a.a.
NCBI ID   WP_052997563.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT4-R     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 352498..363343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y81_RS01585 (C5Y81_01585) - 352766..354607 (-) 1842 WP_000077323.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  C5Y81_RS01590 (C5Y81_01590) metC 354576..355736 (-) 1161 WP_000175842.1 cystathionine beta-lyase MetC -
  C5Y81_RS01595 (C5Y81_01595) - 355733..356836 (-) 1104 WP_000655698.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  C5Y81_RS01605 (C5Y81_01605) spo0J 357498..358343 (+) 846 WP_052997563.1 ParB/RepB/Spo0J family partition protein Regulator
  C5Y81_RS01610 (C5Y81_01610) - 358497..359378 (+) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  C5Y81_RS01615 (C5Y81_01615) - 359408..359611 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  C5Y81_RS01620 (C5Y81_01620) ychF 359623..360720 (+) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  C5Y81_RS01625 (C5Y81_01625) - 360806..360997 (-) 192 WP_001052483.1 hypothetical protein -
  C5Y81_RS01635 (C5Y81_01635) rpsF 361242..361538 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  C5Y81_RS01640 (C5Y81_01640) ssbA 361559..362062 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  C5Y81_RS01645 (C5Y81_01645) rpsR 362114..362356 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32859.93 Da        Isoelectric Point: 10.0355

>NTDB_id=241547 C5Y81_RS01605 WP_052997563.1 357498..358343(+) (spo0J) [Staphylococcus aureus strain IT4-R]
MSELSKSEDQRITKTKYEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRLVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=241547 C5Y81_RS01605 WP_052997563.1 357498..358343(+) (spo0J) [Staphylococcus aureus strain IT4-R]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAATATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
AGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGCTTGTTAAAGAAAAGTGGAGTGTCAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381

Multiple sequence alignment