Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CHF41_RS00830 Genome accession   NZ_CP022680
Coordinates   177547..178908 (+) Length   453 a.a.
NCBI ID   WP_119875580.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 172547..183908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS00815 - 173426..175135 (+) 1710 WP_119875577.1 ABC transporter ATP-binding protein -
  CHF41_RS00820 - 175136..176899 (+) 1764 WP_119875578.1 ABC transporter ATP-binding protein -
  CHF41_RS00825 - 177101..177544 (+) 444 WP_119875579.1 dUTP diphosphatase -
  CHF41_RS00830 radA 177547..178908 (+) 1362 WP_119875580.1 DNA repair protein RadA Machinery gene
  CHF41_RS00835 - 179108..179602 (+) 495 WP_119875581.1 beta-class carbonic anhydrase -
  CHF41_RS00840 - 180270..181025 (+) 756 WP_119875582.1 TIGR00266 family protein -
  CHF41_RS00845 - 181099..181734 (+) 636 WP_119875583.1 ribonuclease P -
  CHF41_RS00850 - 181892..182338 (+) 447 WP_119875584.1 LytTR family DNA-binding domain-containing protein -
  CHF41_RS00855 - 182343..183026 (+) 684 WP_119875585.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49303.65 Da        Isoelectric Point: 6.1848

>NTDB_id=241542 CHF41_RS00830 WP_119875580.1 177547..178908(+) (radA) [Streptococcus respiraculi strain HTS25]
MAKKKATFVCQNCDYHSPKYLGRCPNCGAWSSFVEEIEVAEVKNARVSLTGEKTKPVKLNQVTSSNVARTKTDMAEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEVE
KIQPDFLIIDSIQTIMSPEISSVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSSGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDRPTNPQECFIGEIGLTGEIR
RVNRIEQRINEAAKLGFTKIYAPKNSLIGLEIPQGITIVGVTTIGEVLQKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=241542 CHF41_RS00830 WP_119875580.1 177547..178908(+) (radA) [Streptococcus respiraculi strain HTS25]
ATGGCCAAGAAAAAAGCAACCTTTGTCTGTCAAAATTGTGACTACCATTCACCTAAGTACTTAGGACGTTGCCCCAATTG
CGGAGCTTGGTCCTCTTTTGTGGAAGAAATCGAAGTCGCAGAAGTCAAAAATGCGCGCGTGTCCTTGACAGGAGAAAAGA
CCAAGCCTGTTAAGCTCAATCAAGTCACTTCAAGCAATGTCGCCCGCACTAAAACTGATATGGCAGAGTTTAACCGCGTT
CTCGGTGGTGGTGTAGTGCCAGGAAGCCTTGTTCTAATCGGTGGTGACCCGGGGATTGGAAAGTCTACTCTCCTCTTACA
AGTTTCCACCCAGCTGGCGAGTCGTGGAACAGTTCTTTATGTCAGTGGAGAGGAATCAGCAGAGCAAATCAAGTTACGTA
GCGAACGCCTGGGGGATATCGACAATGAATTTTATCTCTATGCCGAAACCAACATGCAGAGTATTCGAGCCGAGGTGGAG
AAGATTCAGCCTGATTTTCTGATTATCGACTCCATCCAGACTATTATGAGTCCTGAAATCTCCAGTGTCCAAGGTTCGGT
CAGCCAAGTCCGTGAGGTGACCGCAGAGCTGATGCAGATTGCAAAGACCAACAACATCGCAACCTTTATCGTAGGACATG
TGACCAAGGAAGGAACGCTTGCGGGACCTCGCATGCTAGAACACATGGTAGACACTGTTTTGTATTTTGAGGGCGAACGT
CAGCACACCTTTCGTATCCTGCGGGCCGTGAAAAATCGTTTTGGCTCAACCAATGAAATCGGAATTTTCGAGATGCAGTC
GTCAGGTCTTGTGGAAGTGCTAAACCCTAGTCAGGTCTTTTTAGAAGAGCGGTTGGACGGTGCAACTGGTTCAGCCATTG
TTGTGACCATGGAGGGGACACGTCCGATTTTAGCTGAGGTTCAGGCCTTGGTAACACCGACCATGTTTGGCAATGCCAAG
CGCACAACGACAGGTCTTGATTTTAATCGGGCAAGCCTCATTATGGCAGTCTTAGAAAAGCGAGCTGGCTTACTTTTGCA
AAACCAAGATGCTTATCTCAAGTCAGCAGGCGGTGTAAAACTAGATGAACCAGCTATTGACTTAGCGGTTGCTGTTGCCA
TTGCCTCAAGTTACAAGGATAGACCAACCAATCCTCAGGAATGTTTTATCGGAGAAATCGGTTTGACAGGTGAAATCCGT
CGTGTCAACCGCATCGAGCAACGAATCAATGAAGCAGCCAAGCTTGGCTTCACCAAGATTTACGCTCCCAAAAACTCCCT
TATAGGTCTTGAAATCCCCCAAGGTATCACGATCGTTGGTGTGACGACCATTGGTGAGGTCTTGCAGAAAGTATTTGGTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

91.15

99.779

0.909
  radA Streptococcus pneumoniae D39

91.15

99.779

0.909
  radA Streptococcus pneumoniae R6

91.15

99.779

0.909
  radA Streptococcus pneumoniae TIGR4

91.15

99.779

0.909
  radA Streptococcus mitis SK321

91.15

99.779

0.909
  radA Streptococcus mitis NCTC 12261

90.929

99.779

0.907
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

100

0.625

Multiple sequence alignment