Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CIB87_RS20670 Genome accession   NZ_CP022674
Coordinates   4002683..4004410 (-) Length   575 a.a.
NCBI ID   WP_029714775.1    Uniprot ID   A0AA86I3M4
Organism   Priestia megaterium strain SR7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3997683..4009410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIB87_RS20650 (CIB87_20585) - 3998015..3998167 (+) 153 WP_064504589.1 YycC family protein -
  CIB87_RS20655 (CIB87_20590) - 3998481..3999812 (+) 1332 WP_071270691.1 peptide MFS transporter -
  CIB87_RS20660 (CIB87_20595) spo0A 4000204..4000992 (-) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  CIB87_RS20665 (CIB87_20600) spoIVB 4001220..4002500 (-) 1281 WP_114896735.1 SpoIVB peptidase -
  CIB87_RS20670 (CIB87_20605) recN 4002683..4004410 (-) 1728 WP_029714775.1 DNA repair protein RecN Machinery gene
  CIB87_RS20675 (CIB87_20610) ahrC 4004427..4004876 (-) 450 WP_013059136.1 transcriptional regulator AhrC/ArgR -
  CIB87_RS20680 (CIB87_20615) - 4005038..4005865 (-) 828 WP_029714773.1 TlyA family RNA methyltransferase -
  CIB87_RS20685 (CIB87_20620) dxs 4005862..4007763 (-) 1902 WP_071270685.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CIB87_RS20690 (CIB87_20625) - 4008084..4008980 (-) 897 WP_114896736.1 polyprenyl synthetase family protein -
  CIB87_RS20695 (CIB87_20630) - 4008980..4009213 (-) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64713.30 Da        Isoelectric Point: 4.8634

>NTDB_id=241508 CIB87_RS20670 WP_029714775.1 4002683..4004410(-) (recN) [Priestia megaterium strain SR7]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEKQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSTIRRKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDSVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKQTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=241508 CIB87_RS20670 WP_029714775.1 4002683..4004410(-) (recN) [Priestia megaterium strain SR7]
TTGTTAGCTGAATTATCCATTAAAAATTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGTGAAACAGGAGCGGGAAAGTCAATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCAGAGT
TTGTCCGCCACGGAACAGACAGAGCCGAAATTGAAGGGCTCTTCTTATTTGATGAAAAACAGCATCCAAGTCATGAAAAA
GCTAAACAAGTCGGTTTAGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGACATTACCACAAATGGGAAAAGTATTTG
CCGGATCAACGGTAAGCTCGTCACGTTAGCTATCCTACGTGAAGTCGGACAAACGTTAATTGATATACATGGACAGCACG
AGCACCAAGACTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCCTTA
ACGGAGTATCGAGAGGTATTTTCGAGGTATACATCGCTAAAAAAACAGTTAGATCAATTAACTGAAAATGAGCAGCAGAT
GGCGCATCGCCTAGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTACAGCTGAACGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCTAACTTTGAAAAGATCTATACGTCACTAAACGATGCGTACAATGCGCTGCACGGT
GAGCATCAAGGTTTAGATTGGGTAGGCGTAGCCATGAATCATACGGAGGATATTTCGTCATTGGAAAAAAACTATGCCGA
AATTTCTGAAATCATTTCATCGAGCTTCTATCAGCTAGAAGACGCGTCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCCAAACGCTTAGACTTTATTGAAGCGCGCTTAAATGAAATTAATCATTTAAAGCGTAAATACGGTCAAAGC
GTAGATGAAATTCTAGAATATGCTGCACAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGCAA
GATCAAAGAACAGTTAAACAGCGTAGCGCAGGATTTATTAGTAGAAGCTAACAATGTTTCAACTATTCGAAGAAAACTTG
CTCAAGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTTTATATGGCTAAGACCGTATTTCAAATTAAATTCTCT
GTCGTAAATGCAGGTAAAAATGACGTTGAAGTGAATGGAGAAAGAATAAAATTCACAAAAGACGGCATTGACAGCGTAGA
ATTTTATATTTCTACCAATCCAGGTGAACCGTTAAAGCCTCTTGCAAAAGTAGCTTCAGGAGGAGAGCTTTCAAGAATCA
TGCTGGCGTTAAAGAGCATTTTTTCTAAGCATCAAGGTGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAGATCCATGCCATTTCCGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
GCAGGTAGCAGCTATGGCAGATACTCACCTCTTTATCGCTAAAGAGATAAAAGGTGATCGTACAACGACGTCTGTTCTAC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCAGACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.757

100

0.649

Multiple sequence alignment