Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CIB87_RS14530 Genome accession   NZ_CP022674
Coordinates   2855070..2856020 (-) Length   316 a.a.
NCBI ID   WP_114895970.1    Uniprot ID   A0AA86LWC4
Organism   Priestia megaterium strain SR7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2850070..2861020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIB87_RS29300 - 2850823..2850963 (-) 141 WP_169746700.1 hypothetical protein -
  CIB87_RS14510 (CIB87_14470) - 2851217..2852071 (-) 855 WP_071272962.1 manganese catalase family protein -
  CIB87_RS14515 (CIB87_14475) - 2852397..2853353 (-) 957 WP_114895968.1 siderophore ABC transporter substrate-binding protein -
  CIB87_RS14520 (CIB87_14480) - 2853378..2854136 (-) 759 WP_013057889.1 ABC transporter ATP-binding protein -
  CIB87_RS14525 (CIB87_14485) - 2854130..2855077 (-) 948 WP_114895969.1 iron chelate uptake ABC transporter family permease subunit -
  CIB87_RS14530 (CIB87_14490) ceuB 2855070..2856020 (-) 951 WP_114895970.1 ABC transporter permease Machinery gene
  CIB87_RS14535 (CIB87_14495) - 2856580..2857386 (-) 807 WP_013057892.1 cell wall hydrolase -
  CIB87_RS14540 (CIB87_14500) - 2857749..2858003 (+) 255 WP_013057893.1 hypothetical protein -
  CIB87_RS29305 - 2858085..2858249 (-) 165 WP_162871488.1 hypothetical protein -
  CIB87_RS14545 (CIB87_14505) - 2858582..2858911 (-) 330 WP_114895971.1 bh protein -
  CIB87_RS14550 (CIB87_14510) - 2858954..2859985 (-) 1032 WP_063247353.1 zinc-binding dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35032.31 Da        Isoelectric Point: 9.9189

>NTDB_id=241499 CIB87_RS14530 WP_114895970.1 2855070..2856020(-) (ceuB) [Priestia megaterium strain SR7]
MKFYQLILVFAVLSVLSLFVGVQDLSAMDLFHLTKEESHTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYLYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTALLGAVFVLACDILGRVIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=241499 CIB87_RS14530 WP_114895970.1 2855070..2856020(-) (ceuB) [Priestia megaterium strain SR7]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTATCGGTTTTGTCTCTTTTTGTAGGAGTACAAGATCTGTCAGC
GATGGATCTGTTTCATTTAACCAAAGAAGAAAGCCACACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGTATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGTAATAAGTTTGTATCTCCAACAACCGCA
GGAACGATGGACTGGGCAAGACTTGGTGTGTTGATTTCTCTGCTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTCGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCACTAGTCGGTTTAATGCTCGGCAGTATCGTAAGTTCCTTGGCTACCTTCATCGCCTACAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGAGACTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTGAGTATACC
GCTCTTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCGGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCG
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTTTCGCTTATTACGTCGATTACGATTTTGACCGTTGGCATG
CTACCTTTTTTAGGGTTGATTATCCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGAAAAAGCCTGCCTCATAC
AGCGCTGCTTGGAGCTGTGTTCGTACTTGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCTTATGAAATTTCCATTG
GGTTAATGGTGGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.318

95.57

0.5

Multiple sequence alignment