Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CGA24_RS06990 Genome accession   NZ_CP022663
Coordinates   1107854..1108459 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain RM11065     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102854..1113459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGA24_RS06970 (CGA24_06965) - 1103249..1105009 (-) 1761 WP_097362225.1 AAA family ATPase -
  CGA24_RS06975 (CGA24_06970) matP 1105195..1105647 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CGA24_RS06980 (CGA24_06975) ompA 1105719..1106771 (-) 1053 WP_001562588.1 porin OmpA -
  CGA24_RS06985 (CGA24_06980) sulA 1107128..1107637 (-) 510 WP_097362226.1 SOS-induced cell division inhibitor SulA -
  CGA24_RS06990 (CGA24_06985) sxy/tfoX 1107854..1108459 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CGA24_RS06995 (CGA24_06990) yccS 1108446..1110599 (-) 2154 WP_097362227.1 YccS family putative transporter -
  CGA24_RS07000 (CGA24_06995) - 1110618..1111064 (-) 447 WP_001261222.1 YccF domain-containing protein -
  CGA24_RS07005 (CGA24_07000) helD 1111188..1113242 (+) 2055 WP_023225446.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=241407 CGA24_RS06990 WP_001202375.1 1107854..1108459(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain RM11065]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=241407 CGA24_RS06990 WP_001202375.1 1107854..1108459(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain RM11065]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment