Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CIG75_RS19875 Genome accession   NZ_CP022657
Coordinates   4398970..4400343 (-) Length   457 a.a.
NCBI ID   WP_094238177.1    Uniprot ID   A0A223D691
Organism   Tumebacillus algifaecis strain THMBR28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4393970..4405343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIG75_RS19850 (CIG75_19850) ispF 4394480..4394959 (-) 480 WP_094238172.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CIG75_RS19855 (CIG75_19855) ispD 4394956..4395651 (-) 696 WP_094238173.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CIG75_RS19860 (CIG75_19860) - 4395744..4396820 (-) 1077 WP_094238174.1 PIN/TRAM domain-containing protein -
  CIG75_RS19865 (CIG75_19865) pssA 4397130..4397855 (-) 726 WP_407701300.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  CIG75_RS19870 (CIG75_19870) disA 4397889..4398965 (-) 1077 WP_094238176.1 DNA integrity scanning diadenylate cyclase DisA -
  CIG75_RS19875 (CIG75_19875) radA 4398970..4400343 (-) 1374 WP_094238177.1 DNA repair protein RadA Machinery gene
  CIG75_RS19880 (CIG75_19880) - 4400551..4402986 (-) 2436 WP_094238178.1 ATP-dependent Clp protease ATP-binding subunit -
  CIG75_RS19885 (CIG75_19885) - 4403033..4404109 (-) 1077 WP_094238179.1 protein arginine kinase -
  CIG75_RS19890 (CIG75_19890) - 4404112..4404648 (-) 537 WP_094238180.1 UvrB/UvrC motif-containing protein -
  CIG75_RS19895 (CIG75_19895) - 4404669..4405130 (-) 462 WP_094238181.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49811.24 Da        Isoelectric Point: 6.7178

>NTDB_id=241402 CIG75_RS19875 WP_094238177.1 4398970..4400343(-) (radA) [Tumebacillus algifaecis strain THMBR28]
MAKYKSKFVCQDCGYESPKWMGKCPGCGQWNTMAEEVVSKPSPQVNSQILQQSEPAIAHKITEIDTVAEARTHSGLVEFD
RVLGGGVVKGSLVLVGGDPGIGKSTLLLQASNSIAAMGNKVLYVSGEESAKQIKLRADRLDALSDNLYILPETDLERVEQ
HIKQVSPDFLIVDSIQTVYRPGLQSAPGSVGQVRECTAFLLRIAKSLDIATFIVGHVTKEGAIAGPRMLEHMVDAVLYFE
GERHHTYRILRAVKNRFGSTNEIGIFEMREKGLAEVHNPSELFLSERPHGVAGSCVIASMEGTRPVLVEIQALVTPSSYG
NPRRMATGLDHHRVSLIMAVLEKRMGLYLQSQDAYVNVAGGVRLDEPAVDLGIALALGSSFREREIQPTDCFIGEVGLTG
EVRGVSRIEQRVREAMKLGFTRVIVPTKNLRGWQPPADIQVIGVETVQEAFQVALGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=241402 CIG75_RS19875 WP_094238177.1 4398970..4400343(-) (radA) [Tumebacillus algifaecis strain THMBR28]
ATGGCAAAGTATAAATCAAAATTCGTGTGCCAAGACTGTGGATATGAAAGTCCCAAATGGATGGGTAAATGTCCAGGGTG
CGGCCAATGGAATACGATGGCCGAAGAAGTGGTGAGCAAGCCGTCACCACAGGTAAACTCACAAATTTTGCAGCAGTCAG
AGCCTGCGATTGCACATAAGATCACAGAGATCGATACGGTTGCGGAAGCGCGCACGCACAGCGGTTTGGTCGAATTTGAC
CGGGTGTTGGGCGGCGGCGTGGTCAAAGGATCGCTCGTGTTGGTCGGCGGTGATCCGGGCATCGGGAAATCGACTTTGCT
TTTGCAGGCGTCAAACTCGATCGCCGCGATGGGCAACAAGGTGTTGTACGTCTCGGGCGAGGAGTCGGCAAAGCAGATCA
AACTGCGCGCCGATCGTCTGGATGCGCTGTCAGACAACCTGTACATCTTGCCGGAGACCGATCTAGAGCGGGTCGAGCAG
CACATCAAACAGGTCAGCCCCGATTTTCTGATCGTCGATTCGATTCAGACCGTATATCGGCCAGGGTTGCAATCGGCCCC
TGGCAGCGTGGGGCAGGTTCGCGAGTGCACCGCCTTTTTGCTGCGCATCGCCAAATCGCTCGATATTGCCACGTTCATCG
TTGGCCACGTCACCAAAGAAGGCGCGATCGCAGGCCCGAGAATGCTCGAGCACATGGTCGATGCCGTGCTTTATTTTGAA
GGGGAGCGACACCACACCTACCGCATCTTGCGGGCGGTGAAGAACCGCTTCGGTTCGACCAACGAAATCGGTATCTTTGA
GATGCGAGAAAAAGGGTTGGCAGAAGTGCACAACCCGTCCGAACTGTTTCTATCTGAACGACCGCACGGCGTCGCAGGTT
CCTGTGTTATCGCCAGCATGGAGGGCACGCGCCCAGTGCTGGTCGAGATTCAGGCGCTGGTCACGCCATCCAGCTATGGC
AACCCGCGCCGGATGGCGACCGGGCTTGACCACCACCGCGTCAGTTTGATCATGGCGGTGCTGGAGAAGCGGATGGGGTT
ATATTTGCAGTCACAGGATGCATATGTCAACGTAGCAGGCGGTGTTCGCCTCGATGAACCGGCGGTCGATCTCGGCATTG
CGCTGGCGCTCGGCTCCTCGTTTCGGGAGCGTGAGATCCAACCGACCGACTGTTTTATCGGCGAAGTTGGACTGACTGGC
GAAGTGCGCGGCGTATCGCGCATCGAACAGCGCGTTCGGGAAGCGATGAAGCTCGGTTTCACCCGCGTGATCGTGCCGAC
CAAGAACCTGCGCGGATGGCAGCCCCCAGCCGATATTCAAGTGATCGGTGTAGAGACGGTACAGGAGGCGTTCCAAGTAG
CTTTAGGGGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223D691

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.523

100

0.674
  radA Streptococcus mitis SK321

59.292

98.906

0.586
  radA Streptococcus mitis NCTC 12261

59.292

98.906

0.586
  radA Streptococcus pneumoniae Rx1

59.071

98.906

0.584
  radA Streptococcus pneumoniae D39

59.071

98.906

0.584
  radA Streptococcus pneumoniae R6

59.071

98.906

0.584
  radA Streptococcus pneumoniae TIGR4

59.071

98.906

0.584

Multiple sequence alignment