Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECRM9975_RS05445 Genome accession   NZ_CP028432
Coordinates   1084372..1084956 (+) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli strain RM9975     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079372..1089956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRM9975_RS05420 (ECRM9975_05415) ycbZ 1079728..1081488 (-) 1761 WP_000156528.1 Lon protease family protein -
  ECRM9975_RS05425 (ECRM9975_05420) matP 1081674..1082126 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECRM9975_RS05430 (ECRM9975_05425) ompA 1082202..1083242 (-) 1041 WP_000750416.1 porin OmpA -
  ECRM9975_RS05440 (ECRM9975_05435) sulA 1083599..1084108 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECRM9975_RS05445 (ECRM9975_05440) sxy/tfoX 1084372..1084956 (+) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECRM9975_RS05450 (ECRM9975_05445) yccS 1084919..1087081 (-) 2163 WP_000875023.1 YccS family putative transporter -
  ECRM9975_RS05455 (ECRM9975_05450) yccF 1087091..1087537 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECRM9975_RS05460 (ECRM9975_05455) helD 1087660..1089714 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=241387 ECRM9975_RS05445 WP_077825616.1 1084372..1084956(+) (sxy/tfoX) [Escherichia coli strain RM9975]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=241387 ECRM9975_RS05445 WP_077825616.1 1084372..1084956(+) (sxy/tfoX) [Escherichia coli strain RM9975]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995