Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CHN56_RS20840 Genome accession   NZ_CP022654
Coordinates   4083798..4084406 (-) Length   202 a.a.
NCBI ID   WP_094247938.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCDB 291     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4078798..4089406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS20820 (CHN56_04134) dnaD 4079033..4079731 (+) 699 WP_094247836.1 DNA replication protein DnaD -
  CHN56_RS20825 (CHN56_04135) nth 4079750..4080409 (+) 660 WP_094247837.1 endonuclease III -
  CHN56_RS20830 (CHN56_04136) - 4080406..4080897 (+) 492 WP_046559838.1 YpoC family protein -
  CHN56_RS20835 (CHN56_04137) - 4080976..4083759 (-) 2784 WP_070082018.1 PBP1A family penicillin-binding protein -
  CHN56_RS20840 (CHN56_04138) recU 4083798..4084406 (-) 609 WP_094247938.1 Holliday junction resolvase RecU Machinery gene
  CHN56_RS20845 (CHN56_04139) - 4084448..4085410 (+) 963 WP_032861546.1 DUF2515 domain-containing protein -
  CHN56_RS20850 (CHN56_04140) sspM 4085454..4085558 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  CHN56_RS20855 (CHN56_04141) - 4085764..4086009 (+) 246 WP_094247838.1 DUF5446 family protein -
  CHN56_RS20860 (CHN56_04142) - 4086055..4086423 (+) 369 WP_003153529.1 YppE family protein -
  CHN56_RS20865 (CHN56_04143) - 4086462..4086644 (-) 183 WP_003153532.1 YppF family protein -
  CHN56_RS20870 (CHN56_04144) - 4086831..4087232 (+) 402 WP_094247839.1 YppG family protein -
  CHN56_RS20875 (CHN56_04145) - 4087262..4087675 (-) 414 WP_076851379.1 hypothetical protein -
  CHN56_RS20880 (CHN56_04146) - 4087814..4088320 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23708.84 Da        Isoelectric Point: 9.6948

>NTDB_id=241353 CHN56_RS20840 WP_094247938.1 4083798..4084406(-) (recU) [Bacillus velezensis strain SCDB 291]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKRPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=241353 CHN56_RS20840 WP_094247938.1 4083798..4084406(-) (recU) [Bacillus velezensis strain SCDB 291]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAGGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment