Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CHN56_RS19295 Genome accession   NZ_CP022654
Coordinates   3767321..3769051 (+) Length   576 a.a.
NCBI ID   WP_094247738.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCDB 291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3762321..3774051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS19270 (CHN56_03816) - 3762724..3762978 (+) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -
  CHN56_RS19275 (CHN56_03817) - 3762968..3763858 (+) 891 WP_043867281.1 polyprenyl synthetase family protein -
  CHN56_RS19280 (CHN56_03818) dxs 3764002..3765903 (+) 1902 WP_024085592.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CHN56_RS19285 (CHN56_03819) - 3765900..3766745 (+) 846 WP_003153172.1 TlyA family RNA methyltransferase -
  CHN56_RS19290 (CHN56_03820) argR 3766840..3767289 (+) 450 WP_003153173.1 transcriptional regulator ArgR -
  CHN56_RS19295 (CHN56_03821) recN 3767321..3769051 (+) 1731 WP_094247738.1 DNA repair protein RecN Machinery gene
  CHN56_RS19300 (CHN56_03822) spoIVB 3769215..3770495 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  CHN56_RS19305 (CHN56_03823) spo0A 3770776..3771576 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  CHN56_RS19310 (CHN56_03824) - 3771892..3772269 (+) 378 WP_094247739.1 helix-turn-helix domain-containing protein -
  CHN56_RS21670 (CHN56_03825) - 3772465..3772629 (+) 165 WP_172424422.1 hypothetical protein -
  CHN56_RS19315 (CHN56_03826) - 3772619..3772942 (+) 324 WP_094247740.1 hypothetical protein -
  CHN56_RS19320 (CHN56_03827) - 3772978..3773160 (+) 183 WP_253252030.1 hypothetical protein -
  CHN56_RS19325 (CHN56_03828) - 3773157..3773519 (+) 363 WP_094247741.1 hypothetical protein -
  CHN56_RS19330 (CHN56_03829) - 3773516..3773893 (+) 378 WP_094247742.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64065.92 Da        Isoelectric Point: 4.7647

>NTDB_id=241351 CHN56_RS19295 WP_094247738.1 3767321..3769051(+) (recN) [Bacillus velezensis strain SCDB 291]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTELTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=241351 CHN56_RS19295 WP_094247738.1 3767321..3769051(+) (recN) [Bacillus velezensis strain SCDB 291]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGCCGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTATTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAACACTTGGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGTTGGAGGATGCAACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCTAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCCCT
GAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCATGGGCCA
AGAAACTGGCGGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTCAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATTGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCCCAGGTTGCCGCCATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGACGGACTACAACGCATGTCA
CGCCGCTTTCCAAGCAGGATAAGGTAGCGGAAATCGGCCGTATGATTGCGGGTGTTGAAGTGACCGAGCTGACGAAGCGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.715

100

0.887

Multiple sequence alignment