Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CHN56_RS18800 Genome accession   NZ_CP022654
Coordinates   3685542..3686309 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCDB 291     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3680542..3691309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS18770 (CHN56_03716) - 3680825..3682957 (+) 2133 WP_015387990.1 HD family phosphohydrolase -
  CHN56_RS18775 (CHN56_03717) ybeY 3682958..3683431 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  CHN56_RS18780 (CHN56_03718) - 3683412..3683786 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  CHN56_RS18785 (CHN56_03719) - 3683910..3684320 (+) 411 WP_094247722.1 cytidine deaminase -
  CHN56_RS18790 (CHN56_03720) era 3684301..3685206 (+) 906 WP_007408285.1 GTPase Era -
  CHN56_RS18795 (CHN56_03721) - 3685362..3685505 (+) 144 WP_007408286.1 YqzL family protein -
  CHN56_RS18800 (CHN56_03722) recO 3685542..3686309 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  CHN56_RS18805 (CHN56_03723) glyQ 3686611..3687498 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  CHN56_RS18810 (CHN56_03724) glyS 3687491..3689530 (+) 2040 WP_094247723.1 glycine--tRNA ligase subunit beta -
  CHN56_RS18815 (CHN56_03725) ccpN 3689631..3690269 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  CHN56_RS18820 (CHN56_03726) - 3690295..3691107 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=241342 CHN56_RS18800 WP_003152982.1 3685542..3686309(+) (recO) [Bacillus velezensis strain SCDB 291]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=241342 CHN56_RS18800 WP_003152982.1 3685542..3686309(+) (recO) [Bacillus velezensis strain SCDB 291]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGATCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCTAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment