Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CHN56_RS17950 Genome accession   NZ_CP022654
Coordinates   3533802..3534554 (+) Length   250 a.a.
NCBI ID   WP_094247691.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCDB 291     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3528802..3539554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS17935 (CHN56_03556) - 3529025..3529216 (-) 192 WP_003152639.1 hypothetical protein -
  CHN56_RS17940 (CHN56_03557) - 3529669..3532311 (+) 2643 WP_094247689.1 valine--tRNA ligase -
  CHN56_RS17945 (CHN56_03558) - 3532370..3533662 (+) 1293 WP_094247690.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  CHN56_RS17950 (CHN56_03559) comC 3533802..3534554 (+) 753 WP_094247691.1 A24 family peptidase Machinery gene
  CHN56_RS17955 (CHN56_03560) - 3534681..3535682 (+) 1002 WP_094247692.1 SPOR domain-containing protein -
  CHN56_RS17960 (CHN56_03561) - 3535823..3536392 (+) 570 WP_012118105.1 Maf family protein -
  CHN56_RS17965 (CHN56_03562) radC 3536424..3537119 (+) 696 WP_007408165.1 DNA repair protein RadC -
  CHN56_RS17970 (CHN56_03563) mreB 3537211..3538224 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  CHN56_RS17975 (CHN56_03564) mreC 3538255..3539118 (+) 864 WP_016938781.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27030.62 Da        Isoelectric Point: 9.2521

>NTDB_id=241335 CHN56_RS17950 WP_094247691.1 3533802..3534554(+) (comC) [Bacillus velezensis strain SCDB 291]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLTALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=241335 CHN56_RS17950 WP_094247691.1 3533802..3534554(+) (comC) [Bacillus velezensis strain SCDB 291]
ATGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTTGTTTCCT
ATATCCTGCAAAGAGGAAGGTGCAGAAACTGCCGTGCGAAGCTGTCAGTGATGTATCCGGCAGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCCGGTATCCATTTCGGTTTCTCAAAAGAGCTGCTAACCGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment