Detailed information NTG0241318

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CHN56_RS12655
• Genome accession: NZ_CP022654
• Coordinates: 2542750..2543895 (-)
• Length: 381 a.a.
• NCBI ID: WP_094247421.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SCDB 291
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2537750..2548895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHN56_RS12635 (CHN56_02502)	-	2538105..2539160 (+)	1056	WP_071543387.1	SagB/ThcOx family dehydrogenase	-
CHN56_RS12640 (CHN56_02503)	-	2539157..2540497 (+)	1341	WP_094247420.1	MATE family efflux transporter	-
CHN56_RS12645 (CHN56_02504)	-	2540498..2541925 (+)	1428	WP_071543386.1	DUF885 family protein	-
CHN56_RS12650 (CHN56_02505)	speB	2542087..2542524 (+)	438	Protein_2423	agmatinase	-
CHN56_RS21390 (CHN56_02506)	-	2542647..2542766 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
CHN56_RS12655 (CHN56_02507)	rapF	2542750..2543895 (-)	1146	WP_094247421.1	Rap family tetratricopeptide repeat protein	Regulator
CHN56_RS12660 (CHN56_02508)	-	2544187..2544615 (+)	429	WP_003151069.1	DUF1934 family protein	-
CHN56_RS12665 (CHN56_02509)	argS	2544612..2546282 (+)	1671	WP_094247422.1	arginine--tRNA ligase	-
CHN56_RS12670 (CHN56_02510)	narK	2546417..2547607 (+)	1191	WP_025853600.1	nitrate transporter NarK	-
CHN56_RS12675 (CHN56_02511)	-	2547705..2548421 (+)	717	WP_025853599.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0722

>NTDB_id=241318 CHN56_RS12655 WP_094247421.1 2542750..2543895(-) (rapF) [Bacillus velezensis strain SCDB 291]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=241318 CHN56_RS12655 WP_094247421.1 2542750..2543895(-) (rapF) [Bacillus velezensis strain SCDB 291]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.816	100	0.698
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535