Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CHN56_RS10890 Genome accession   NZ_CP022654
Coordinates   2192277..2193389 (-) Length   370 a.a.
NCBI ID   WP_094247314.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCDB 291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2187277..2198389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS10875 (CHN56_02154) gyrA 2187363..2189822 (-) 2460 WP_004392898.1 DNA gyrase subunit A -
  CHN56_RS10880 (CHN56_02155) gyrB 2190038..2191954 (-) 1917 WP_004392900.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CHN56_RS10885 (CHN56_02156) remB 2192014..2192259 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  CHN56_RS10890 (CHN56_02157) recF 2192277..2193389 (-) 1113 WP_094247314.1 DNA replication/repair protein RecF Machinery gene
  CHN56_RS10895 (CHN56_02158) rlbA 2193405..2193620 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  CHN56_RS10900 (CHN56_02159) dnaN 2193755..2194891 (-) 1137 WP_094247315.1 DNA polymerase III subunit beta -
  CHN56_RS10905 (CHN56_02160) dnaA 2195076..2196416 (-) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  CHN56_RS10910 rpmH 2197038..2197172 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  CHN56_RS10915 (CHN56_02161) rnpA 2197327..2197677 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42400.34 Da        Isoelectric Point: 7.0882

>NTDB_id=241314 CHN56_RS10890 WP_094247314.1 2192277..2193389(-) (recF) [Bacillus velezensis strain SCDB 291]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=241314 CHN56_RS10890 WP_094247314.1 2192277..2193389(-) (recF) [Bacillus velezensis strain SCDB 291]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCAATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCTAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment