Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | CHN56_RS10660 | Genome accession | NZ_CP022654 |
| Coordinates | 2150573..2150863 (+) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain SCDB 291 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2145573..2155863
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHN56_RS10645 (CHN56_02109) | - | 2145796..2147121 (-) | 1326 | WP_094247906.1 | G5 and 3D domain-containing protein | - |
| CHN56_RS10650 (CHN56_02110) | - | 2147256..2148023 (-) | 768 | WP_032868379.1 | TatD family hydrolase | - |
| CHN56_RS10655 (CHN56_02111) | metG | 2148099..2150090 (-) | 1992 | WP_025854082.1 | methionine--tRNA ligase | - |
| CHN56_RS10660 (CHN56_02112) | abrB | 2150573..2150863 (+) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| CHN56_RS10665 (CHN56_02113) | rsmI | 2150914..2151795 (-) | 882 | WP_094247307.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| CHN56_RS10670 (CHN56_02114) | - | 2151770..2152069 (-) | 300 | WP_007409921.1 | GIY-YIG nuclease family protein | - |
| CHN56_RS10675 (CHN56_02115) | - | 2152056..2152799 (-) | 744 | WP_004264717.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| CHN56_RS10680 (CHN56_02116) | yabA | 2152860..2153219 (-) | 360 | WP_004264720.1 | replication initiation-control protein YabA | - |
| CHN56_RS10685 (CHN56_02117) | ricT | 2153234..2154061 (-) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| CHN56_RS10690 (CHN56_02118) | holB | 2154064..2155053 (-) | 990 | WP_094247308.1 | DNA polymerase III subunit delta' | - |
| CHN56_RS10695 (CHN56_02119) | - | 2155065..2155505 (-) | 441 | WP_004264730.1 | DUF327 family protein | - |
| CHN56_RS10700 (CHN56_02120) | darA | 2155518..2155847 (-) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=241312 CHN56_RS10660 WP_169510469.1 2150573..2150863(+) (abrB) [Bacillus velezensis strain SCDB 291]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=241312 CHN56_RS10660 WP_169510469.1 2150573..2150863(+) (abrB) [Bacillus velezensis strain SCDB 291]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTCGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTCGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |