Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CHN56_RS09110 Genome accession   NZ_CP022654
Coordinates   1864785..1865222 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCDB 291     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1859785..1870222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS09095 (CHN56_01804) - 1862641..1863003 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  CHN56_RS09100 (CHN56_01805) hxlA 1863235..1863870 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  CHN56_RS09105 (CHN56_01806) hxlB 1863867..1864424 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  CHN56_RS09110 (CHN56_01807) nucA/comI 1864785..1865222 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CHN56_RS09115 (CHN56_01808) nin/comJ 1865244..1865642 (+) 399 WP_094247249.1 competence protein ComJ Regulator
  CHN56_RS09120 - 1865661..1865890 (-) 230 Protein_1767 family 1 glycosylhydrolase -
  CHN56_RS22050 - 1865815..1866168 (-) 354 WP_082181748.1 family 1 glycosylhydrolase -
  CHN56_RS09130 (CHN56_01810) - 1866110..1866430 (-) 321 WP_015388719.1 YckD family protein -
  CHN56_RS09135 (CHN56_01811) - 1866503..1866937 (-) 435 WP_021494203.1 RDD family protein -
  CHN56_RS09140 (CHN56_01812) - 1866952..1868088 (-) 1137 WP_077721769.1 zinc-dependent alcohol dehydrogenase -
  CHN56_RS09145 (CHN56_01813) - 1868153..1869355 (-) 1203 WP_043866820.1 GTP-binding protein -
  CHN56_RS21850 - 1869472..1869633 (+) 162 Protein_1773 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=241307 CHN56_RS09110 WP_003156588.1 1864785..1865222(+) (nucA/comI) [Bacillus velezensis strain SCDB 291]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=241307 CHN56_RS09110 WP_003156588.1 1864785..1865222(+) (nucA/comI) [Bacillus velezensis strain SCDB 291]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment