Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CHN56_RS03785 Genome accession   NZ_CP022654
Coordinates   847820..848284 (+) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus velezensis strain SCDB 291     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 842820..853284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS03760 (CHN56_00751) - 843330..843878 (-) 549 WP_094246985.1 hypothetical protein -
  CHN56_RS03765 (CHN56_00752) fadH 843989..844753 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  CHN56_RS03770 (CHN56_00753) - 844897..845760 (+) 864 WP_014304919.1 metallophosphoesterase -
  CHN56_RS03775 (CHN56_00754) - 845835..846329 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  CHN56_RS03780 (CHN56_00755) - 846405..847697 (+) 1293 WP_024085236.1 MFS transporter -
  CHN56_RS03785 (CHN56_00756) kre 847820..848284 (+) 465 WP_014417605.1 YkyB family protein Regulator
  CHN56_RS03790 (CHN56_00757) cheV 848327..849238 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  CHN56_RS21525 (CHN56_00758) - 849427..849588 (+) 162 WP_007409608.1 hypothetical protein -
  CHN56_RS03805 (CHN56_00759) - 849789..850958 (+) 1170 WP_007611083.1 aminotransferase A -
  CHN56_RS03810 (CHN56_00760) - 850984..852804 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=241286 CHN56_RS03785 WP_014417605.1 847820..848284(+) (kre) [Bacillus velezensis strain SCDB 291]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=241286 CHN56_RS03785 WP_014417605.1 847820..848284(+) (kre) [Bacillus velezensis strain SCDB 291]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment