Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CHN56_RS02125 Genome accession   NZ_CP022654
Coordinates   418462..418896 (-) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain SCDB 291     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 413462..423896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS02090 (CHN56_00426) - 413474..413827 (+) 354 WP_003154073.1 multidrug efflux SMR transporter -
  CHN56_RS02095 (CHN56_00427) - 413841..414293 (-) 453 WP_070081858.1 OsmC family protein -
  CHN56_RS02100 (CHN56_00428) - 414354..415061 (-) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  CHN56_RS02105 - 415317..415550 (-) 234 WP_041481863.1 hypothetical protein -
  CHN56_RS02110 (CHN56_00429) - 415729..417057 (+) 1329 WP_094246917.1 S8 family peptidase -
  CHN56_RS02115 (CHN56_00430) - 417250..417612 (+) 363 WP_007410383.1 hypothetical protein -
  CHN56_RS02120 (CHN56_00431) - 417646..418401 (-) 756 WP_094246918.1 YoaK family protein -
  CHN56_RS02125 (CHN56_00432) nucA/comI 418462..418896 (-) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CHN56_RS02130 (CHN56_00433) - 419185..420396 (+) 1212 WP_094247884.1 cytochrome P450 -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=241279 CHN56_RS02125 WP_007611576.1 418462..418896(-) (nucA/comI) [Bacillus velezensis strain SCDB 291]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=241279 CHN56_RS02125 WP_007611576.1 418462..418896(-) (nucA/comI) [Bacillus velezensis strain SCDB 291]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCAGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment