Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SK637_RS07320 Genome accession   NZ_CP028415
Coordinates   1455993..1458215 (-) Length   740 a.a.
NCBI ID   WP_033689647.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1450993..1463215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS07305 (SK637_01427) - 1452550..1453251 (-) 702 WP_033689191.1 M57 family metalloprotease -
  SK637_RS07310 (SK637_01428) - 1453314..1454093 (-) 780 WP_033689192.1 alpha/beta hydrolase -
  SK637_RS07315 (SK637_01429) - 1454161..1455822 (-) 1662 WP_033689193.1 ribonuclease J -
  SK637_RS07320 (SK637_01430) recJ 1455993..1458215 (-) 2223 WP_033689647.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SK637_RS07325 (SK637_01431) - 1458391..1459149 (+) 759 WP_001229569.1 amino acid ABC transporter ATP-binding protein -
  SK637_RS07330 (SK637_01432) - 1459160..1459954 (+) 795 WP_080710553.1 transporter substrate-binding domain-containing protein -
  SK637_RS07335 (SK637_01433) - 1459967..1460644 (+) 678 WP_000131145.1 amino acid ABC transporter permease -
  SK637_RS07340 (SK637_01434) - 1460654..1461313 (+) 660 WP_033689194.1 amino acid ABC transporter permease -
  SK637_RS07345 (SK637_01435) - 1461409..1462539 (-) 1131 WP_033689195.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82623.35 Da        Isoelectric Point: 4.3607

>NTDB_id=241256 SK637_RS07320 WP_033689647.1 1455993..1458215(-) (recJ) [Streptococcus mitis strain SK637]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSIPEILPDAYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRVGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRNLFIAFGGHAGAAGMTLEVEKLADLSQVLEDYVREKGADAAGKNKLNLDEELDLETLSLEMVKSFERLAPFGMDNQKP
VFYIKDFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWVTEFSQIKKLELAVKLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFAGELPNLVNSDAVVVKTIPEDITQLKTIFQEQNFSTVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPGFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVMIKDGVMTVNKEAPNREIGESQIYQNLKQTVKD
QEMMALGTVQEIYDFLMEKE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=241256 SK637_RS07320 WP_033689647.1 1455993..1458215(-) (recJ) [Streptococcus mitis strain SK637]
TTGATAACTCCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTAGGTCCTGAGGTGGCTCGGTTATTATTTGAAAGAGGGATTCAGAACCAAGAAAGTCTGAAGAAGTTTTTAGAGCCTT
CCTTAGAAGACTTGCACGATCCCTATCTGCTCCATGATATGGACAAGGCAGTAGAACGGATTCGTCAGGCCATTGAAGAA
GGGGAAAATATTCTCATCTATGGAGACTACGATGCGGATGGCATGACTTCGGCTTCGATTGTGAAGGAAAGTTTGGAACA
GCTTGGCGCTGAGTGCCGAGTTTATCTGCCCAATCGTTTTACCGACGGTTATGGACCTAATGCTAGTGTTTACAAATACT
TTATTGAACAAGAAGGAATTTCCTTGATTGTGACGGTGGATAATGGGGTTGCGGGTCACGAGGCTATTGAACTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACCGATCACCATTCCATACCTGAAATCTTGCCAGATGCCTATGCGATTGTCCATCC
TGAGCATCCAGATGCGGACTATCCTTTCAAATATTTGGCTGGTTGTGGAGTGGCTTTCAAGCTGGCTTGTGCCCTTTTGG
AAGAAGTACAAGTGGAATTGCTTGATTTGGTCGCTATTGGTACCATTGCTGATATGGTTAGTTTAACAGATGAGAACCGT
ATCTTGGTTCAGTATGGTCTGGAAATGTTGGGACATACTCAGCGCGTTGGTCTACAAGAAATGCTGGACATGGCTGGGAT
TGCCGCCAACGAAGTAACAGAAGAAACGGTTGGTTTCCAGATTGCCCCTCGTTTGAATGCCTTGGGCCGCTTGGATGATC
CCAATCCTGCCATTGATTTGTTGACTGGATTTGACGACGAGGAAGCCCATGAGATTGCCCTCATGATTCATCAGAAAAAT
GAAGAGCGCAAGGAAATCGTCCAGTCTATCTATGAAGAAGCCAAGACCATGGTGGACCCTGAGAAGAAGGTCCAAGTCTT
GGCTAAGGAAGGCTGGAATCCTGGGGTTCTGGGAATCGTGGCTGGTCGTTTGTTGGAAGAACTAGGGCAGACAGTCATCG
TTCTTAATATAGAAGATGGTCGTGCCAAGGGTAGTGCCCGTAGTGTGGAAGCAGTGGATATTTTTGAGGCTCTGGATCCT
CATCGAAACCTCTTCATCGCCTTTGGTGGCCATGCTGGTGCAGCAGGAATGACGCTGGAAGTGGAGAAACTCGCAGATTT
ATCTCAGGTCTTGGAAGACTATGTCCGTGAAAAAGGCGCAGATGCTGCTGGCAAGAACAAGTTAAATTTAGATGAAGAAC
TGGATTTGGAGACTTTGAGTCTTGAAATGGTCAAAAGTTTTGAACGTTTGGCACCTTTTGGCATGGACAATCAGAAACCT
GTCTTTTATATCAAGGATTTTCAGGTCGAAAGTGCCCGTACCATGGGGGCAGGCAATGCCCATCTCAAACTGAAAATTTC
CAAAGGTGAGGCGAGTTTTGAAGTGGTGGCCTTTGGCCAAGGCAGATGGGTGACAGAGTTTTCTCAAATCAAGAAGCTAG
AGCTGGCAGTCAAATTGTCTGTCAACCAATGGAATGGCCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAG
GGTGTTCAACTTTTTAACATCCGTGGGAAGAATGCAGTCTTGCCAGAAGGGGTTCCAGTCTTGGATTTTGCTGGGGAACT
GCCCAATCTAGTAAATAGTGATGCTGTGGTTGTAAAAACCATTCCTGAGGATATTACTCAGCTGAAGACCATTTTTCAGG
AGCAGAATTTTTCTACTGTTTATTTCAAAAATGATATTGACAAGGCCTACTATCTGACAGGCTATGGGACTAGAGAGCAG
TTTGCCAAATTGTACAAGACCATCTACCAGTTCCCAGGGTTTGATATTCGCTACAAACTGAAGGATTTGGCTGCCTATCT
CAATATTCAACAAATCTTGCTGGTCAAGATGATTCAAGTATTTGAAGAGCTAGGCTTTGTGATGATTAAAGATGGAGTCA
TGACAGTCAATAAAGAGGCGCCAAATCGGGAAATCGGAGAAAGTCAGATTTACCAAAATCTCAAACAAACCGTCAAAGAC
CAAGAAATGATGGCGCTGGGTACCGTGCAAGAAATTTATGACTTTTTAATGGAAAAAGAGTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

95.946

100

0.959
  recJ Bacillus subtilis subsp. subtilis str. 168

36.528

100

0.381