Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BaGK_RS14590 Genome accession   NZ_CP022653
Coordinates   2964136..2964882 (-) Length   248 a.a.
NCBI ID   WP_088117680.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2959136..2969882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS14565 (BaGK_14565) mreC 2959532..2960404 (-) 873 WP_003325240.1 rod shape-determining protein MreC -
  BaGK_RS14570 (BaGK_14570) mreB 2960435..2961448 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  BaGK_RS14575 (BaGK_14575) radC 2961540..2962235 (-) 696 WP_003325238.1 RadC family protein -
  BaGK_RS14580 (BaGK_14580) - 2962270..2962839 (-) 570 WP_010789377.1 Maf family protein -
  BaGK_RS14585 (BaGK_14585) - 2962986..2964002 (-) 1017 WP_088117679.1 SPOR domain-containing protein -
  BaGK_RS14590 (BaGK_14590) comC 2964136..2964882 (-) 747 WP_088117680.1 prepilin peptidase Machinery gene
  BaGK_RS14595 (BaGK_14595) - 2965036..2966331 (-) 1296 WP_088117681.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BaGK_RS14600 (BaGK_14600) valS 2966389..2969031 (-) 2643 WP_088117682.1 valine--tRNA ligase -
  BaGK_RS21900 (BaGK_14605) - 2969478..2969627 (+) 150 WP_167376469.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26793.52 Da        Isoelectric Point: 8.9511

>NTDB_id=241255 BaGK_RS14590 WP_088117680.1 2964136..2964882(-) (comC) [Bacillus atrophaeus strain GQJK17]
MVFVMFILGLIFGSFFYAAGCRIPLQISIIKPRSSCSFCRHPLSYAELIPVFSFFLQKGRCKSCAQKLSLMYPAAELWTA
CLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGVALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILA
LYVKIAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=241255 BaGK_RS14590 WP_088117680.1 2964136..2964882(-) (comC) [Bacillus atrophaeus strain GQJK17]
ATGGTTTTTGTCATGTTTATTCTCGGTCTCATCTTCGGTTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCTATTATAAAACCGCGCTCATCCTGTTCATTTTGCCGCCATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCAGATGTAAAAGCTGTGCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCA
TGTTTGTTTACGGCAGCTTATTTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCATTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATGTTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCCGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGCTATTTGCCGTTTTGGGTGTCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGCTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCCCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATTTGTACGGTGAAGAAATATTAGCA
CTCTATGTCAAAATCGCCATGTACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

62.348

99.597

0.621

Multiple sequence alignment