Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BaGK_RS13550 Genome accession   NZ_CP022653
Coordinates   2774974..2775741 (-) Length   255 a.a.
NCBI ID   WP_088117596.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2769974..2780741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS13530 (BaGK_13530) - 2770132..2770944 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  BaGK_RS13535 (BaGK_13535) ccpN 2770970..2771608 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  BaGK_RS13540 (BaGK_13540) glyS 2771756..2773795 (-) 2040 WP_094232431.1 glycine--tRNA ligase subunit beta -
  BaGK_RS13545 (BaGK_13545) glyQ 2773788..2774675 (-) 888 WP_010789234.1 glycine--tRNA ligase subunit alpha -
  BaGK_RS13550 (BaGK_13550) recO 2774974..2775741 (-) 768 WP_088117596.1 DNA repair protein RecO Machinery gene
  BaGK_RS13555 (BaGK_13555) - 2775778..2775921 (-) 144 WP_004429487.1 YqzL family protein -
  BaGK_RS13560 (BaGK_13560) era 2776078..2776983 (-) 906 WP_004429485.1 GTPase Era -
  BaGK_RS13565 (BaGK_13565) - 2776964..2777374 (-) 411 WP_010789236.1 cytidine deaminase -
  BaGK_RS13570 (BaGK_13570) - 2777488..2777865 (-) 378 WP_004429481.1 diacylglycerol kinase family protein -
  BaGK_RS13575 (BaGK_13575) ybeY 2777846..2778319 (-) 474 WP_094232432.1 rRNA maturation RNase YbeY -
  BaGK_RS13580 (BaGK_13580) - 2778320..2780455 (-) 2136 WP_094232433.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29184.86 Da        Isoelectric Point: 8.5598

>NTDB_id=241248 BaGK_RS13550 WP_088117596.1 2774974..2775741(-) (recO) [Bacillus atrophaeus strain GQJK17]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGTDPDVITFIVQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=241248 BaGK_RS13550 WP_088117596.1 2774974..2775741(-) (recO) [Bacillus atrophaeus strain GQJK17]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAACCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTGTAATAGGTTTGTATCCTGAACTCAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAAGATGAGCTAAAACGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.941

100

0.929

Multiple sequence alignment