Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BaGK_RS11560 Genome accession   NZ_CP022653
Coordinates   2413248..2413856 (+) Length   202 a.a.
NCBI ID   WP_010789030.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2408248..2418856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS11520 (BaGK_11520) - 2409354..2409860 (-) 507 WP_003325657.1 PTS sugar transporter subunit IIA -
  BaGK_RS11525 (BaGK_11525) - 2410010..2410429 (+) 420 WP_010789024.1 Hsp20/alpha crystallin family protein -
  BaGK_RS11530 (BaGK_11530) - 2410449..2410838 (-) 390 WP_094232263.1 YppG family protein -
  BaGK_RS11535 (BaGK_11535) - 2411028..2411216 (+) 189 WP_035175493.1 YppF family protein -
  BaGK_RS11540 (BaGK_11540) - 2411250..2411624 (-) 375 WP_003325652.1 YppE family protein -
  BaGK_RS11545 (BaGK_11545) - 2411666..2411911 (-) 246 WP_061670114.1 DUF5446 family protein -
  BaGK_RS11550 (BaGK_11550) sspM 2412112..2412216 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  BaGK_RS11555 (BaGK_11555) - 2412243..2413205 (-) 963 WP_094232264.1 DUF2515 domain-containing protein -
  BaGK_RS11560 (BaGK_11560) recU 2413248..2413856 (+) 609 WP_010789030.1 Holliday junction resolvase RecU Machinery gene
  BaGK_RS11565 (BaGK_11565) - 2413894..2416647 (+) 2754 WP_094232265.1 PBP1A family penicillin-binding protein -
  BaGK_RS11570 (BaGK_11570) - 2416739..2417230 (-) 492 WP_094232266.1 YpoC family protein -
  BaGK_RS11575 (BaGK_11575) nth 2417227..2417886 (-) 660 WP_003325645.1 endonuclease III -
  BaGK_RS11580 (BaGK_11580) dnaD 2417905..2418603 (-) 699 WP_088117453.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23625.92 Da        Isoelectric Point: 9.8392

>NTDB_id=241236 BaGK_RS11560 WP_010789030.1 2413248..2413856(+) (recU) [Bacillus atrophaeus strain GQJK17]
MIRYPNGKTFQPKKTVSSQNRQKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEQLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=241236 BaGK_RS11560 WP_010789030.1 2413248..2413856(+) (recU) [Bacillus atrophaeus strain GQJK17]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAGAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAGCAAATTGCCGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.547

99.505

0.901

Multiple sequence alignment