Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BaGK_RS08150 Genome accession   NZ_CP022653
Coordinates   1608163..1608441 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603163..1613441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS08130 (BaGK_08130) - 1604357..1605271 (+) 915 WP_094231954.1 ketopantoate reductase family protein -
  BaGK_RS08135 (BaGK_08135) - 1605303..1606535 (-) 1233 WP_094231955.1 aminopeptidase -
  BaGK_RS08140 (BaGK_08140) - 1606637..1606771 (-) 135 WP_010788482.1 protein YkpC -
  BaGK_RS08145 (BaGK_08145) mreBH 1606873..1607880 (-) 1008 WP_094233180.1 cell shape-determining protein MreBH -
  BaGK_RS08150 (BaGK_08150) abrB 1608163..1608441 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  BaGK_RS08155 (BaGK_08155) - 1608654..1609940 (+) 1287 WP_003329145.1 ATP-binding protein -
  BaGK_RS08160 (BaGK_08160) - 1609953..1610792 (+) 840 WP_094231956.1 gamma-glutamylcyclotransferase -
  BaGK_RS08165 (BaGK_08165) ktrC 1610842..1611507 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  BaGK_RS08170 (BaGK_08170) ade 1611677..1613404 (+) 1728 WP_094231957.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=241231 BaGK_RS08150 WP_003329146.1 1608163..1608441(+) (abrB) [Bacillus atrophaeus strain GQJK17]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=241231 BaGK_RS08150 WP_003329146.1 1608163..1608441(+) (abrB) [Bacillus atrophaeus strain GQJK17]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAGGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment