Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BaGK_RS08030 Genome accession   NZ_CP022653
Coordinates   1583788..1584363 (+) Length   191 a.a.
NCBI ID   WP_003327252.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578788..1589363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS08000 (BaGK_08000) dapD 1578909..1579619 (+) 711 WP_094231940.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BaGK_RS08005 (BaGK_08005) - 1579692..1580816 (+) 1125 WP_094231941.1 N-acetyldiaminopimelate deacetylase -
  BaGK_RS08010 (BaGK_08010) - 1580877..1581122 (+) 246 WP_003327256.1 YkuS family protein -
  BaGK_RS08015 (BaGK_08015) - 1581161..1581964 (-) 804 WP_003327255.1 mechanosensitive ion channel family protein -
  BaGK_RS08020 (BaGK_08020) ahpA 1582214..1582756 (+) 543 WP_003327254.1 biofilm-specific peroxidase AhpA -
  BaGK_RS08025 (BaGK_08025) - 1582840..1583298 (+) 459 WP_003327253.1 TlpA family protein disulfide reductase -
  BaGK_RS08030 (BaGK_08030) rok 1583788..1584363 (+) 576 WP_003327252.1 transcriptional regulator Rok Regulator
  BaGK_RS08035 (BaGK_08035) - 1584409..1585368 (-) 960 WP_010788466.1 hypothetical protein -
  BaGK_RS08040 (BaGK_08040) - 1585512..1586096 (+) 585 WP_094231942.1 molybdenum cofactor guanylyltransferase -
  BaGK_RS08045 (BaGK_08045) - 1586168..1587187 (+) 1020 WP_094231943.1 MoeB/ThiF family adenylyltransferase -
  BaGK_RS08050 (BaGK_08050) glp 1587207..1588499 (+) 1293 WP_094231944.1 gephyrin-like molybdotransferase Glp -
  BaGK_RS08055 (BaGK_08055) mobB 1588460..1588984 (+) 525 WP_094231945.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21713.65 Da        Isoelectric Point: 9.8783

>NTDB_id=241230 BaGK_RS08030 WP_003327252.1 1583788..1584363(+) (rok) [Bacillus atrophaeus strain GQJK17]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSSAAETKKDFRPERKSESLPVLAELAAQEIRSYQPQ
QASQPQPQSISSIPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQSL
IKMYPEVKKPYRGQYILEGEIASDSAENVTE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=241230 BaGK_RS08030 WP_003327252.1 1583788..1584363(+) (rok) [Bacillus atrophaeus strain GQJK17]
ATGTTTAATGAGAGGGAAGCTTTACGCTTGCGTTTGGAACAGTTAAATGAGGCTGAGGTTAAAGTCATCCGTGAATATCA
AATAGAGCGTGACAAAATATATGCAAAACTAAGAGAGCTTGACCGCAATGGAAGCTCAGCAGCGGAAACAAAAAAAGATT
TTCGCCCTGAAAGAAAAAGTGAGTCTCTTCCTGTGCTAGCCGAGCTTGCAGCACAAGAGATCAGAAGCTATCAGCCGCAG
CAGGCATCACAGCCGCAGCCGCAATCCATCTCTTCTATTCCGGCGGGTATTCCGGACGGAACGACAAGAAGAAGAAGAGG
AACTGCAAGACCGGGTTCAAAGGCAGCAAAGCTTCGTGAAGCGGCAATCAAAACATTAAAACGCCATAACGCAGCGATCA
AAAGCTCCGAACTTCAAAAGGAAATTGAGAAGGAAAGCGGGCTTGAAATCCCTAATATGACAACGTTTATGCAAAGTTTA
ATTAAAATGTATCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGCGAAATCGCTTCAGACTCTGCTGA
AAATGTGACTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.598

100

0.88

Multiple sequence alignment