Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BaGK_RS06845 Genome accession   NZ_CP022653
Coordinates   1370804..1371229 (+) Length   141 a.a.
NCBI ID   WP_094233172.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1365804..1376229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS06815 (BaGK_06815) - 1366061..1367971 (+) 1911 WP_094231822.1 right-handed parallel beta-helix repeat-containing protein -
  BaGK_RS06820 (BaGK_06820) - 1367998..1368270 (+) 273 WP_094233171.1 hypothetical protein -
  BaGK_RS06830 (BaGK_06830) - 1369009..1369323 (+) 315 WP_223254934.1 hypothetical protein -
  BaGK_RS06835 (BaGK_06835) - 1369946..1370275 (-) 330 WP_010788288.1 hypothetical protein -
  BaGK_RS06840 (BaGK_06840) - 1370335..1370613 (-) 279 WP_003327515.1 hypothetical protein -
  BaGK_RS06845 (BaGK_06845) nucA/comI 1370804..1371229 (+) 426 WP_094233172.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BaGK_RS06850 (BaGK_06850) - 1371378..1372040 (+) 663 WP_003327513.1 MgtC/SapB family protein -
  BaGK_RS06855 (BaGK_06855) - 1372099..1372338 (-) 240 WP_003327512.1 hypothetical protein -
  BaGK_RS06860 (BaGK_06860) - 1372551..1372763 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BaGK_RS06865 (BaGK_06865) - 1372823..1373038 (-) 216 WP_081112782.1 spore coat protein -
  BaGK_RS06870 (BaGK_06870) - 1373353..1374753 (+) 1401 WP_094231823.1 polysaccharide deacetylase family protein -
  BaGK_RS06875 (BaGK_06875) - 1374805..1375278 (-) 474 WP_063637839.1 YjfA family protein -
  BaGK_RS06880 (BaGK_06880) - 1375414..1375824 (-) 411 WP_094231824.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15488.35 Da        Isoelectric Point: 4.7462

>NTDB_id=241225 BaGK_RS06845 WP_094233172.1 1370804..1371229(+) (nucA/comI) [Bacillus atrophaeus strain GQJK17]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAIAAGHSDVCTIDRAGADERREESL
KGIPTKPGYDRDEWPMAVCEEGGTGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=241225 BaGK_RS06845 WP_094233172.1 1370804..1371229(+) (nucA/comI) [Bacillus atrophaeus strain GQJK17]
ATGAAAAAATGGATCACGAGCTTATTTCTGACCGCAGCGATATTGTTTGGATTGATGGGTGCGGAGGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTCCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGATAGCGGCCGGGCATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGATTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGTGAAGAAGGCGGGACCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

89.362

0.532

Multiple sequence alignment