Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BaGK_RS06080 Genome accession   NZ_CP022653
Coordinates   1229705..1230280 (+) Length   191 a.a.
NCBI ID   WP_010788160.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1224705..1235280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS22575 - 1225135..1225650 (-) 516 WP_371176577.1 methyl-accepting chemotaxis protein -
  BaGK_RS22580 - 1225939..1226316 (-) 378 Protein_1142 protoglobin domain-containing protein -
  BaGK_RS06065 (BaGK_06065) - 1226591..1228183 (-) 1593 WP_373422320.1 FAD-dependent oxidoreductase -
  BaGK_RS06070 (BaGK_06070) - 1228257..1229114 (+) 858 WP_094231764.1 SDR family oxidoreductase -
  BaGK_RS06075 (BaGK_06075) - 1229145..1229378 (-) 234 WP_003327696.1 IDEAL domain-containing protein -
  BaGK_RS06080 (BaGK_06080) comK 1229705..1230280 (+) 576 WP_010788160.1 competence protein ComK Regulator
  BaGK_RS06085 (BaGK_06085) - 1230498..1230770 (+) 273 WP_003327694.1 excalibur calcium-binding domain-containing protein -
  BaGK_RS06090 (BaGK_06090) - 1230798..1232285 (-) 1488 WP_010788161.1 sodium:solute symporter family protein -
  BaGK_RS06095 (BaGK_06095) - 1232282..1232482 (-) 201 WP_003327692.1 DUF3311 domain-containing protein -
  BaGK_RS06100 (BaGK_06100) - 1232607..1232972 (-) 366 WP_094231765.1 hypothetical protein -
  BaGK_RS06105 (BaGK_06105) - 1233127..1233750 (+) 624 WP_094231766.1 TVP38/TMEM64 family protein -
  BaGK_RS06110 (BaGK_06110) lepB 1233753..1234253 (+) 501 WP_003327688.1 signal peptidase I -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22264.48 Da        Isoelectric Point: 8.1215

>NTDB_id=241216 BaGK_RS06080 WP_010788160.1 1229705..1230280(+) (comK) [Bacillus atrophaeus strain GQJK17]
MSQKTDAPLDTYEVNSSTIAVLPEPMNGKMYSKIIEKDCTFYVSMKPLQIVDRSCRYFGSSYAGRKAGTYEVINISHKPP
IMVDLSNHIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTAVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRVEH
APKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 576 bp        

>NTDB_id=241216 BaGK_RS06080 WP_010788160.1 1229705..1230280(+) (comK) [Bacillus atrophaeus strain GQJK17]
ATGAGTCAGAAAACTGACGCACCCCTAGACACCTACGAAGTAAACAGCTCAACAATCGCCGTATTGCCCGAACCGATGAA
CGGGAAAATGTACTCAAAGATCATTGAAAAGGACTGCACGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGTTACTTTGGCTCAAGTTATGCGGGAAGAAAAGCGGGAACCTATGAAGTGATTAACATTTCTCACAAGCCGCCG
ATCATGGTGGACCTTTCCAACCATATCTTTTTATTCCCTACACTTTCTTCAACAAGACCCCAATGCGGCTGGATTTCACA
CGTGCATGTAAAAGAATTTAAAGCCACGGAATTCGACGATACAGCTGTGACCTTTTCCAATGGAAAAACAATGGAGCTCC
CGGTCTCCTGCAATTCGTTCGAAAACCAGGTCTACCGCACGGCATGGCTCAGAACAAAATTCCAAGACCGGGTCGAACAC
GCGCCAAAACGGCAGGAATTCATGCTGTACCCGAAGGAAGAACGCACGCGGATGATTTATGATTTTATTTTGCGCGAGCT
GGGCGAGCGGTACTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

87.5

100

0.88

Multiple sequence alignment