Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BaGK_RS04955 Genome accession   NZ_CP022653
Coordinates   1018064..1018855 (+) Length   263 a.a.
NCBI ID   WP_004430590.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013064..1023855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS04925 (BaGK_04925) - 1013906..1014919 (+) 1014 WP_088118453.1 FecCD family ABC transporter permease -
  BaGK_RS04930 (BaGK_04930) - 1015038..1015919 (+) 882 WP_063638875.1 PhzF family phenazine biosynthesis isomerase -
  BaGK_RS04935 (BaGK_04935) - 1016000..1016584 (+) 585 WP_088116770.1 nitroreductase family protein -
  BaGK_RS04940 (BaGK_04940) - 1016624..1016815 (-) 192 WP_004430587.1 YfhD family protein -
  BaGK_RS04945 (BaGK_04945) - 1016893..1017003 (-) 111 WP_003223230.1 YfhE family protein -
  BaGK_RS04950 (BaGK_04950) - 1017062..1017973 (-) 912 WP_088116771.1 TIGR01777 family oxidoreductase -
  BaGK_RS04955 (BaGK_04955) recX 1018064..1018855 (+) 792 WP_004430590.1 recombination regulator RecX Regulator
  BaGK_RS04960 (BaGK_04960) - 1018863..1019189 (+) 327 WP_010788005.1 YfhH family protein -
  BaGK_RS04965 (BaGK_04965) - 1019326..1020525 (+) 1200 WP_094231665.1 MFS transporter -
  BaGK_RS04970 (BaGK_04970) - 1020566..1020718 (-) 153 WP_004430596.1 small, acid-soluble spore protein K -
  BaGK_RS04975 (BaGK_04975) - 1020836..1021105 (+) 270 WP_004430597.1 YfhJ family protein -
  BaGK_RS04980 (BaGK_04980) - 1021233..1021769 (+) 537 WP_094231666.1 SH3 domain-containing protein -
  BaGK_RS04985 (BaGK_04985) - 1021910..1022256 (+) 347 Protein_950 SdpI family protein -
  BaGK_RS04990 (BaGK_04990) - 1022243..1023109 (+) 867 WP_094231667.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30952.20 Da        Isoelectric Point: 7.4549

>NTDB_id=241211 BaGK_RS04955 WP_004430590.1 1018064..1018855(+) (recX) [Bacillus atrophaeus strain GQJK17]
MPFITKITTQKKTTERFNIFLDNKYAFSVDADVLVKFDLKKGKELDDLDIVEIQYGDEVKKGFNRALEFLSYRMRSTKEV
TDHLKKKEISDPAITEIIHKLNDYRYLNDKEFAEAYASTHKKTNGKGPDVLYKELRSKGIDDDTIKETLSTFSFEEQTEE
ALKHIGKILKKEKKLSTKEIKQRAQMLLQRKGFSFDVITAALEQTEYANDEDTEREALRQHAEKALRKYRYDGSYESKMK
VKQYLFRKGFSLDMIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=241211 BaGK_RS04955 WP_004430590.1 1018064..1018855(+) (recX) [Bacillus atrophaeus strain GQJK17]
ATGCCGTTTATCACGAAAATCACAACGCAGAAAAAAACGACCGAGCGCTTTAACATTTTTCTCGATAATAAATATGCTTT
CAGTGTGGATGCGGACGTACTCGTGAAATTCGACCTGAAAAAAGGAAAAGAACTCGACGACCTTGATATCGTTGAAATTC
AATACGGGGATGAAGTAAAGAAAGGCTTTAACCGGGCGCTTGAATTTTTATCATACCGGATGCGCTCAACAAAAGAGGTA
ACGGACCATTTAAAGAAGAAAGAAATATCTGATCCGGCCATTACAGAAATCATCCATAAGCTGAATGATTATCGCTATCT
GAATGATAAAGAGTTCGCAGAAGCTTATGCGAGCACACATAAGAAAACAAATGGAAAGGGACCGGACGTTCTTTATAAAG
AGTTAAGGTCAAAGGGGATCGACGATGATACGATCAAAGAGACACTGAGCACATTTTCTTTTGAGGAACAGACAGAGGAG
GCGCTGAAGCATATTGGAAAAATCCTGAAAAAAGAAAAAAAGCTCTCTACAAAAGAAATCAAGCAGCGAGCGCAAATGCT
TCTGCAGCGTAAGGGCTTCTCCTTCGACGTCATCACAGCGGCGCTTGAGCAGACCGAGTATGCAAACGATGAAGATACAG
AAAGGGAAGCGTTACGGCAGCACGCTGAAAAGGCGCTAAGAAAATACCGATATGACGGCTCCTACGAGAGCAAGATGAAG
GTAAAACAATATTTATTCAGAAAAGGATTCTCACTGGATATGATTGACCAATTTCTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

82.89

100

0.829

Multiple sequence alignment