Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BaGK_RS01945 Genome accession   NZ_CP022653
Coordinates   375402..375839 (-) Length   145 a.a.
NCBI ID   WP_088116478.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 370402..380839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS01910 (BaGK_01910) - 370968..371423 (+) 456 WP_094231348.1 RDD family protein -
  BaGK_RS01915 (BaGK_01915) - 371508..371837 (+) 330 WP_010787600.1 YckD family protein -
  BaGK_RS01920 (BaGK_01920) - 371941..372366 (+) 426 WP_003328070.1 MarR family winged helix-turn-helix transcriptional regulator -
  BaGK_RS01925 (BaGK_01925) - 372354..372695 (+) 342 WP_094231349.1 DUF3147 family protein -
  BaGK_RS01930 (BaGK_01930) - 372715..373443 (+) 729 WP_063638715.1 AAA family ATPase -
  BaGK_RS01935 (BaGK_01935) - 373513..374949 (+) 1437 WP_094231350.1 glycoside hydrolase family 1 protein -
  BaGK_RS01940 (BaGK_01940) nin/comJ 374985..375383 (-) 399 WP_010787604.1 competence protein ComJ Regulator
  BaGK_RS01945 (BaGK_01945) nucA/comI 375402..375839 (-) 438 WP_088116478.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BaGK_RS01950 (BaGK_01950) - 376061..377764 (-) 1704 WP_205751115.1 methyl-accepting chemotaxis protein -
  BaGK_RS01955 (BaGK_01955) hxlB 377892..378449 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  BaGK_RS01960 (BaGK_01960) hxlA 378456..379088 (-) 633 WP_088116480.1 3-hexulose-6-phosphate synthase -
  BaGK_RS01965 (BaGK_01965) - 379306..379671 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16005.77 Da        Isoelectric Point: 4.1626

>NTDB_id=241206 BaGK_RS01945 WP_088116478.1 375402..375839(-) (nucA/comI) [Bacillus atrophaeus strain GQJK17]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEERR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=241206 BaGK_RS01945 WP_088116478.1 375402..375839(-) (nucA/comI) [Bacillus atrophaeus strain GQJK17]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGAACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

82.639

99.31

0.821

Multiple sequence alignment