Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BaGK_RS00020 Genome accession   NZ_CP022653
Coordinates   3518..4630 (+) Length   370 a.a.
NCBI ID   WP_094231207.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS00005 (BaGK_00005) dnaA 492..1832 (+) 1341 WP_003326038.1 chromosomal replication initiator protein DnaA -
  BaGK_RS00010 (BaGK_00010) dnaN 2014..3150 (+) 1137 WP_010790563.1 DNA polymerase III subunit beta -
  BaGK_RS00015 (BaGK_00015) rlbA 3287..3502 (+) 216 WP_003326035.1 ribosome maturation protein RlbA -
  BaGK_RS00020 (BaGK_00020) recF 3518..4630 (+) 1113 WP_094231207.1 DNA replication/repair protein RecF Machinery gene
  BaGK_RS00025 (BaGK_00025) remB 4648..4893 (+) 246 WP_094231208.1 extracellular matrix regulator RemB -
  BaGK_RS00030 (BaGK_00030) gyrB 4950..6866 (+) 1917 WP_010790565.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BaGK_RS00035 (BaGK_00035) gyrA 7093..9558 (+) 2466 WP_010790566.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42472.51 Da        Isoelectric Point: 7.6570

>NTDB_id=241199 BaGK_RS00020 WP_094231207.1 3518..4630(+) (recF) [Bacillus atrophaeus strain GQJK17]
MYIQNMELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGS
IPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQR
NHFLKQLQSRKQTDQTMLDVLTEQLIETAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPEDLSKI
GDSYQRAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=241199 BaGK_RS00020 WP_094231207.1 3518..4630(+) (recF) [Bacillus atrophaeus strain GQJK17]
TTGTATATCCAAAATATGGAATTAACGTCTTATCGTAATTACGAGCGTGCTGAACTTCAATTTGAAAATAAAGTAAATGT
CATCATCGGTGAGAACGCTCAAGGGAAGACAAACCTCATGGAAGCGATCTATGTTTTGTCGATGGCGAAATCACATCGCA
CGTCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGTCG
ATCCCGATGCAACTTGTCATTTCCAAGAAGGGGAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAACTGAGCCGGTA
TGTAGGAGCGCTGAATACAATTATGTTCGCGCCCGAGGACTTAAATCTCGTAAAGGGCAGCCCGCAAGTAAGACGGCGGT
TTCTTGACATGGAAATCGGCCAGGTATCTCCAGTCTATTTGTACGATCTTTCTCTGTACCAGAAAATTCTTACGCAAAGA
AATCATTTTTTGAAACAGCTGCAAAGCAGGAAACAGACTGACCAGACAATGCTCGACGTTCTGACTGAACAGCTGATCGA
GACTGCTGCAAAGGTTGTTGTAAAACGCCTGCAATTTACAGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGAA
TTTCAAGAGGGCTTGAAGAACTGACGCTGAAGTATCAGACGGCTCTTGAGGTATCAGATCCCGAAGACTTGTCGAAAATA
GGAGATAGTTACCAAAGGGCGTTTTCAAAGCTAAGAGAAAAAGAAATTGAGCGTGGTGTAACGCTGTCAGGACCTCATCG
GGATGATGTTCTTTTTTATGTGAACGGACGCGATGTGCAAACATATGGTTCTCAGGGGCAGCAGCGGACAACGGCATTGT
CACTCAAGCTGGCGGAAATTGACTTGATTCATGAAGAAATTGGAGAATACCCTATCTTACTTTTGGATGATGTGCTGAGT
GAGCTGGATGACTATCGGCAGTCGCATTTGCTTCATACGATCCAAGGCCGTGTTCAAACGTTTGTCACTACGACAAGTGT
AGATGGCATTGATCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

95.135

100

0.951

Multiple sequence alignment