Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SK637_RS00830 Genome accession   NZ_CP028415
Coordinates   179152..180918 (+) Length   588 a.a.
NCBI ID   WP_033688001.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 174152..185918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS00815 (SK637_00160) argR 174267..174713 (+) 447 WP_001231476.1 arginine repressor -
  SK637_RS00820 (SK637_00161) hexA 174764..177298 (+) 2535 WP_033687999.1 DNA mismatch repair protein MutS Machinery gene
  SK637_RS00825 (SK637_00162) patA 177444..179150 (+) 1707 WP_033688000.1 multidrug efflux ABC transporter subunit PatA -
  SK637_RS00830 (SK637_00163) rcrQ 179152..180918 (+) 1767 WP_033688001.1 multidrug efflux ABC transporter subunit PatB Regulator
  SK637_RS10020 (SK637_00164) - 181041..181187 (+) 147 WP_023941542.1 hypothetical protein -
  SK637_RS00835 (SK637_00166) - 181208..181896 (+) 689 Protein_157 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SK637_RS00840 (SK637_00167) - 182065..183414 (+) 1350 WP_033688002.1 glucose-6-phosphate isomerase -
  SK637_RS00845 (SK637_00168) gltX 183542..185002 (+) 1461 WP_033688003.1 glutamate--tRNA ligase -
  SK637_RS00850 (SK637_00169) - 185016..185450 (+) 435 WP_033688004.1 cytidine deaminase family protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65660.14 Da        Isoelectric Point: 4.9117

>NTDB_id=241185 SK637_RS00830 WP_033688001.1 179152..180918(+) (rcrQ) [Streptococcus mitis strain SK637]
MKTVQFFWNYFKVYKLSFVVVILMIVLATLAQALFPVFSGQAVTELANLVQAYQNGNPELVWQSLSGIMVNLGLLVLVLF
ISSVIYMCLMTRVIAESTNEMRKGLFGKLARLTVSFFDRRQDGDILSRFTSDLDNILQAFNESLIQVMSNIVLYIGLILV
MFSRNVTLALITIASTPVAFLMLIFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQEDMMAGFLEQNERVRK
ATFKGRMFSGILFPVMNGMSLVNTAIVIFAGSAVLLNDKTIETSTALGLIVMFAQFSQQYYQPIIQVAASWGSLQLAFTG
AERIQEMFDAEEEIRPEKAPIFTKLQEGVEISHIDFSYLPDKPILKDVSISAPKGQMTAVVGPTGSGKTTIMNLINRFYD
VDAGGIYFDGKDIRDYDLDSLRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEAAAKATHIHDYIESLPDKYDTLID
DDQSIFSTGQKQLISIARTLMTDPEVLILDEATSNVDTVTESKIQHAMEAVVADRTSFVIAHRLKTILNADQIIVLKDGE
VIERGNHHELLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=241185 SK637_RS00830 WP_033688001.1 179152..180918(+) (rcrQ) [Streptococcus mitis strain SK637]
ATGAAGACAGTTCAATTTTTTTGGAATTATTTTAAAGTATATAAGCTATCATTTGTAGTTGTCATCCTGATGATTGTTCT
GGCGACTCTTGCTCAAGCCCTCTTTCCAGTCTTTTCTGGACAAGCGGTAACAGAGCTAGCCAATTTAGTTCAAGCTTATC
AAAATGGCAACCCAGAACTTGTTTGGCAAAGTCTATCAGGAATCATGGTTAATCTTGGCCTGCTGGTTTTGGTTCTATTT
ATCTCTAGTGTGATATACATGTGTCTCATGACGCGCGTGATTGCAGAGTCGACCAACGAGATGCGTAAAGGCCTCTTCGG
TAAGCTTGCTCGCTTGACAGTTTCTTTCTTTGACCGCCGACAAGATGGCGATATCCTGTCTCGTTTTACCAGTGATTTGG
ATAATATCCTCCAAGCCTTTAACGAGAGCTTGATTCAGGTCATGAGCAATATTGTTTTATACATTGGTCTGATTCTTGTC
ATGTTTTCGAGAAATGTGACGCTGGCGCTCATCACCATTGCCAGCACACCAGTGGCCTTCCTTATGCTGATTTTCATTGT
GAAAATGGCACGCAAATACACCAACCTCCAGCAGAAAGAGGTAGGAAAGCTCAACGCCTATATGGATGAGAGTATCTCAG
GCCAAAAAGCTGTAATTGTGCAAGGAATTCAAGAGGATATGATGGCAGGATTTCTTGAACAAAATGAGCGCGTGCGCAAG
GCAACCTTTAAAGGAAGAATGTTCTCAGGAATTCTTTTCCCTGTCATGAATGGGATGAGTCTGGTTAATACAGCTATTGT
CATCTTTGCGGGTTCGGCTGTCCTATTAAATGATAAGACTATTGAAACAAGTACAGCTTTGGGTCTGATTGTTATGTTCG
CTCAATTTTCTCAGCAGTACTACCAGCCTATTATTCAAGTTGCAGCTAGTTGGGGAAGCCTTCAGTTAGCCTTTACAGGG
GCTGAACGGATTCAGGAAATGTTCGATGCAGAGGAAGAAATCCGACCTGAAAAGGCTCCAATCTTCACTAAGTTGCAAGA
AGGTGTTGAAATCAGTCATATTGATTTTTCATACTTGCCTGATAAACCTATTCTGAAAGATGTCAGCATTTCCGCTCCGA
AAGGTCAGATGACTGCAGTTGTGGGTCCGACAGGGTCAGGAAAAACCACTATTATGAACCTCATCAATCGCTTTTATGAT
GTTGATGCTGGTGGTATTTATTTTGATGGCAAAGATATTCGTGACTATGATTTAGATAGTCTCAGAAGTAAGGTAGGAAT
TGTCTTGCAAGATTCGGTCTTGTTTAGCGGAACCATTCGAGACAATATCCGTTTCGGTGTGCCAGATGCCAGTCAAGAAA
TGGTTGAGGCAGCAGCCAAGGCAACCCACATTCATGACTATATTGAAAGTTTGCCTGATAAATACGATACTCTTATCGAT
GATGACCAGAGCATCTTCTCAACTGGGCAAAAGCAATTGATTTCTATCGCTCGAACCCTGATGACAGATCCAGAAGTTCT
CATTCTCGATGAAGCGACTTCAAACGTAGATACGGTGACAGAAAGCAAGATTCAGCATGCCATGGAAGCGGTTGTAGCAG
ACAGAACCAGTTTCGTCATTGCCCACCGTTTGAAGACCATCCTCAATGCTGACCAGATTATTGTCCTTAAAGATGGAGAA
GTCATTGAACGCGGTAACCACCATGAACTATTGAAACTAGGTGGATTCTACTCAGAACTTTATCACAATCAATTTGTCTT
TGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(365-514)

ABC transporter transmembrane region (ABC_membrane)

(19-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.426

98.98

0.361