Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SK637_RS00230 Genome accession   NZ_CP028415
Coordinates   47610..48380 (+) Length   256 a.a.
NCBI ID   WP_033687895.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42610..53380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS00210 (SK637_00043) - 44208..44645 (+) 438 WP_033687891.1 CoA-binding protein -
  SK637_RS00220 (SK637_00044) - 44865..45875 (-) 1011 WP_033687892.1 YeiH family protein -
  SK637_RS00225 (SK637_00045) - 46444..47613 (+) 1170 WP_033687893.1 pyridoxal phosphate-dependent aminotransferase -
  SK637_RS00230 (SK637_00046) recO 47610..48380 (+) 771 WP_033687895.1 DNA repair protein RecO Machinery gene
  SK637_RS00235 (SK637_00047) plsX 48377..49369 (+) 993 WP_033687897.1 phosphate acyltransferase PlsX -
  SK637_RS00240 (SK637_00048) - 49375..49608 (+) 234 WP_000136445.1 acyl carrier protein -
  SK637_RS00245 (SK637_00050) - 50060..51241 (+) 1182 WP_033687898.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SK637_RS00250 (SK637_00051) - 51330..52508 (+) 1179 WP_033687899.1 N-acetylmuramoyl-L-alanine amidase family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29818.27 Da        Isoelectric Point: 5.1721

>NTDB_id=241180 SK637_RS00230 WP_033687895.1 47610..48380(+) (recO) [Streptococcus mitis strain SK637]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLGPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=241180 SK637_RS00230 WP_033687895.1 47610..48380(+) (recO) [Streptococcus mitis strain SK637]
ATGATTCAGTCTATCACGAGTCAAGGTTTGGTGCTCTACAATCGCAACTTTCGTGAGGATGACAAGCTAGTTAAGATTTT
TACAGAGCAGGCTGGTAAGCGGATGTTTTTCGTCAAACATGCTGGTCAGTCTAAGCTGGGCCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTTAGCTACATTGAGGACTATCACGAGGTGATGACCTTTCCA
AAGATTAATAGCGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCGGCTCTTGCCGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTACAAAAGACTTTGGAGTTGATGGAAGCTGGCTTGGATTATCAGGTTTTGACCA
ACATTTTTGAAATTCAAATCTTGACCCGATTTGGGATCAGCCTCAATTTTAATGAGTGTGTCTTTTGTCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGCGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
AAATCAAGCAAGAGTTACGCCAATTTATGGATCAACTCTACGAAGAATACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.438

100

0.984