Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHC10_RS06800 Genome accession   NZ_CP022611
Coordinates   1338020..1338616 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain CDC 0106     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333020..1343616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHC10_RS06785 (CHC10_01296) helD 1333228..1335282 (-) 2055 WP_004179218.1 DNA helicase IV -
  CHC10_RS06790 (CHC10_01297) - 1335407..1335853 (+) 447 WP_002898425.1 YccF domain-containing protein -
  CHC10_RS06795 (CHC10_01298) yccS 1335871..1338006 (+) 2136 WP_002898422.1 YccS family putative transporter -
  CHC10_RS06800 (CHC10_01299) sxy/tfoX 1338020..1338616 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  CHC10_RS06810 (CHC10_01300) sulA 1338965..1339474 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  CHC10_RS06815 (CHC10_01301) ompA 1339827..1340897 (+) 1071 WP_002898408.1 porin OmpA -
  CHC10_RS06820 (CHC10_01302) matP 1341029..1341481 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  CHC10_RS06825 (CHC10_01303) - 1341667..1343424 (+) 1758 WP_004179203.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=241154 CHC10_RS06800 WP_004179217.1 1338020..1338616(-) (sxy/tfoX) [Klebsiella pneumoniae strain CDC 0106]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=241154 CHC10_RS06800 WP_004179217.1 1338020..1338616(-) (sxy/tfoX) [Klebsiella pneumoniae strain CDC 0106]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment