Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SM12261_RS04610 Genome accession   NZ_CP028414
Coordinates   876185..877852 (+) Length   555 a.a.
NCBI ID   WP_000923603.1    Uniprot ID   -
Organism   Streptococcus mitis NCTC 12261     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 871185..882852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM12261_RS04580 (SM12261_0890) udk 871779..872417 (+) 639 WP_001181377.1 uridine kinase -
  SM12261_RS04585 (SM12261_0891) xseA 872544..873884 (+) 1341 WP_000417451.1 exodeoxyribonuclease VII large subunit -
  SM12261_RS04590 (SM12261_0892) - 873862..874074 (+) 213 WP_000043226.1 exodeoxyribonuclease VII small subunit -
  SM12261_RS04595 (SM12261_0893) - 874071..874946 (+) 876 WP_000743802.1 polyprenyl synthetase family protein -
  SM12261_RS04600 (SM12261_0894) - 874939..875754 (+) 816 WP_001041089.1 TlyA family RNA methyltransferase -
  SM12261_RS04605 (SM12261_0895) - 875747..876178 (+) 432 WP_001034397.1 arginine repressor -
  SM12261_RS04610 (SM12261_0896) recN 876185..877852 (+) 1668 WP_000923603.1 DNA repair protein RecN Machinery gene
  SM12261_RS04615 (SM12261_0897) - 877854..878582 (+) 729 WP_000133362.1 metallophosphoesterase family protein -
  SM12261_RS04620 (SM12261_0898) lepA 878661..880484 (+) 1824 WP_001047209.1 translation elongation factor 4 -
  SM12261_RS04625 (SM12261_0899) - 880747..881223 (+) 477 WP_000521976.1 PTS sugar transporter subunit IIA -
  SM12261_RS04630 (SM12261_0900) - 881262..881567 (+) 306 WP_000590547.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62875.32 Da        Isoelectric Point: 4.5797

>NTDB_id=241126 SM12261_RS04610 WP_000923603.1 876185..877852(+) (recN) [Streptococcus mitis NCTC 12261]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLEMGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDVAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMETELKKLEVNLVDLAGQLASARHDLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNEHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=241126 SM12261_RS04610 WP_000923603.1 876185..877852(+) (recN) [Streptococcus mitis NCTC 12261]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCTATGAATATGATGTTGGGGGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCGCCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTGGAAATGGGTGATGAAATTATCATCCGTCGAGAAATCTTGCAAAATGGTCGTAGTATTAGTCGTGT
CAATGGCCAGATGGTTAATCTGTCTGTTTTGCGTGCTATTGGGCAACATCTGGTAGATATTCATGGTCAGCATGACCAAG
AAGAGTTAATGCGCCCTCAACTGCATATCCAGATGTTGGATGAATTCGGTGACGTAGCTTTTTGGGACCTAAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGAAAAATGCGTAAGCAGGTTTTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
TCGTATTGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAAGCCGGAGAAGATCTGGCTCTCAATC
AGGAGCGTGATAAACTTCTCAATCATAAAAATATTGCGGATACGCTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTTTGTCTGAGACCTACTATGTCTTAGAAGATATTAGCAAACGTCTGGAAGCTATCATTGAGGACCTTGATT
TTGACGGCAATCGTCTTATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACCATTACGCGTAAATATGGTGGGACTGTA
GACGATGTCTTGCTTTATTTCGCCAAGATTACGGAAGAATACAATCTCTTGACAGGAAATAACCTTTCATCTGAGGATAT
GGAAACCGAACTCAAGAAATTGGAAGTTAATCTTGTCGACTTGGCAGGCCAGCTTGCATCTGCTCGTCATGACTTAGCTC
AGCAGCTAGAAGCAGAGATTAAACAAGAGCTTCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGCAAG
GGCAAATTCAGTCGTGAGGGCAATGAAATGGTCGAGTTTTACATTTCAACCAACCCTGGCGAAGACTTTAAACCCTTGGT
TAAGGTTGCATCTGGTGGGGAATTATCTCGTCTCATGCTAGCTATTAAGTCTGCCTTTTCTCGTAAAGAAGGCAAGACCA
GCATTGTCTTTGATGAGGTGGATACAGGAGTTTCAGGTCGTGTAGCTCAAGCCATCGCACAGAAGATTCACAAGATTGGC
CAACATGGTCAGGTTCTAGCTATCTCCCACTTGCCACAAGTGATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGAGCATTCAACGGTTTCGACTGTTCGTCTTTTGACGGTTGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACGGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.606

100

0.436

Multiple sequence alignment