Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SM12261_RS00215 Genome accession   NZ_CP028414
Coordinates   44592..45362 (+) Length   256 a.a.
NCBI ID   WP_000616130.1    Uniprot ID   -
Organism   Streptococcus mitis NCTC 12261     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39592..50362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM12261_RS00195 (SM12261_0040) - 41411..41848 (+) 438 WP_000076488.1 CoA-binding protein -
  SM12261_RS00205 (SM12261_0041) - 42075..43085 (-) 1011 WP_000009133.1 YeiH family protein -
  SM12261_RS00210 (SM12261_0042) - 43426..44595 (+) 1170 WP_000366338.1 pyridoxal phosphate-dependent aminotransferase -
  SM12261_RS00215 (SM12261_0043) recO 44592..45362 (+) 771 WP_000616130.1 DNA repair protein RecO Machinery gene
  SM12261_RS00220 (SM12261_0044) plsX 45359..46351 (+) 993 WP_000717442.1 phosphate acyltransferase PlsX -
  SM12261_RS00225 (SM12261_0045) - 46357..46590 (+) 234 WP_000136445.1 acyl carrier protein -
  SM12261_RS00230 (SM12261_0047) - 47042..48235 (+) 1194 WP_000748703.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SM12261_RS00235 (SM12261_0048) - 48324..49505 (+) 1182 WP_000748697.1 N-acetylmuramoyl-L-alanine amidase family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29796.14 Da        Isoelectric Point: 5.0164

>NTDB_id=241091 SM12261_RS00215 WP_000616130.1 44592..45362(+) (recO) [Streptococcus mitis NCTC 12261]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECAFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKSEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLSDWGQLLKEENK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=241091 SM12261_RS00215 WP_000616130.1 44592..45362(+) (recO) [Streptococcus mitis NCTC 12261]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGCAATTTTCGTGAGGATGACAAGCTAGTCAAGATTTT
TACAGAGCAGGCTGGCAAGCGCATGTTTTTCGTCAAACACGCTGGTCAGTCTAAGCTAGCTCCTGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATTAATGATGACGGACTCAGCTACATCGAGGACTATCATGAGGTGATGACCTTTCCT
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCGACCTATGTAGCGGCTCTTGCAGATGCGAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTATTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCTGGCTTGGATTATCAGGTTTTGACTA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGGATCAGCCTCAATTTTAATGAGTGTGCCTTTTGTCATCGGGTTGGT
CAGGCTTTTGATTTTTCTTTCAAATATGGAGCCTGTCTTTGCCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAACATCCCTTATCTGCTTAATCAATTTCAAGCCATTGATTTTGAGACCTTGGAGACCATTTCGCTCAAGTCTG
AAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTCTATGAAGAGTACGTTGGAATTCATCTAAAATCAAAGAAATTT
ATTGATTCCCTATCCGACTGGGGTCAATTACTAAAAGAGGAGAACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

97.266

100

0.973