Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   Sp14A_RS10420 Genome accession   NZ_CP022601
Coordinates   2052579..2053295 (+) Length   238 a.a.
NCBI ID   WP_115131199.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain 14A0014     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2047579..2058295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sp14A_RS10405 (Sp14A_21550) - 2047654..2048391 (+) 738 WP_115130969.1 GntR family transcriptional regulator -
  Sp14A_RS10410 (Sp14A_21560) treC 2048570..2050195 (-) 1626 WP_115130970.1 alpha,alpha-phosphotrehalase -
  Sp14A_RS10415 (Sp14A_21570) treP 2050342..2052378 (-) 2037 WP_115130971.1 PTS system trehalose-specific EIIBC component -
  Sp14A_RS10420 (Sp14A_21580) treR 2052579..2053295 (+) 717 WP_115131199.1 trehalose operon repressor Regulator
  Sp14A_RS10425 (Sp14A_21590) - 2053330..2054487 (-) 1158 WP_115130972.1 glycerate kinase -
  Sp14A_RS10430 (Sp14A_21600) - 2054667..2056307 (+) 1641 WP_115130973.1 phosphoenolpyruvate carboxykinase (ATP) -
  Sp14A_RS10435 (Sp14A_21610) - 2056435..2057079 (-) 645 WP_115130974.1 glutamate racemase -
  Sp14A_RS10440 (Sp14A_21620) - 2057084..2057329 (-) 246 WP_240314761.1 hypothetical protein -
  Sp14A_RS10445 (Sp14A_21630) dtd 2057419..2057862 (-) 444 WP_115130976.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27333.30 Da        Isoelectric Point: 7.2016

>NTDB_id=241077 Sp14A_RS10420 WP_115131199.1 2052579..2053295(+) (treR) [Streptococcus pluranimalium strain 14A0014]
MKKYEKVFRNLETAINQGIYQVNDYLPTEEELAKEYAVSRDTIRKALKLLAEHALIQKRQGSGSQIIKHERINFPVSALT
SFQEIAQAQGMATTTNVIAIDKLIVDGKMSELTGFPPKSHVWRITRQRVMEGVASVLDIDYLLTTFVPEIDRSIAEKSIY
DYLENHLHLMIDLAEKEITIDQTNQQDSILLDLAGEHHVVSIKSKVFLTNGQQFQFTESRHKLDKFRFVDFAKRRPAN

Nucleotide


Download         Length: 717 bp        

>NTDB_id=241077 Sp14A_RS10420 WP_115131199.1 2052579..2053295(+) (treR) [Streptococcus pluranimalium strain 14A0014]
ATGAAAAAGTATGAGAAAGTTTTCCGAAATTTAGAGACTGCTATTAACCAAGGAATCTACCAAGTTAACGACTATTTACC
AACCGAAGAAGAGTTGGCTAAAGAGTATGCTGTCAGCCGAGATACCATTCGAAAAGCCTTAAAGCTCCTGGCAGAACACG
CACTTATTCAAAAACGTCAAGGTAGTGGCTCACAGATCATCAAGCATGAGCGCATTAACTTTCCTGTTTCAGCTCTTACC
AGCTTTCAGGAAATCGCCCAAGCGCAAGGGATGGCAACGACAACTAATGTCATCGCTATCGACAAACTCATTGTTGATGG
GAAGATGTCAGAACTAACTGGCTTCCCACCAAAGAGTCATGTCTGGCGTATCACGCGCCAACGCGTGATGGAAGGGGTGG
CATCTGTCCTTGATATTGACTACTTGTTGACGACTTTTGTTCCTGAAATCGATCGTTCCATTGCGGAGAAATCCATTTAT
GATTATTTGGAAAACCACCTGCACCTCATGATTGATCTAGCTGAAAAAGAAATCACCATCGACCAGACCAATCAGCAAGA
CAGTATTCTTCTGGACTTAGCAGGTGAGCATCATGTTGTTTCCATTAAGTCCAAAGTCTTTCTCACCAATGGTCAACAAT
TTCAATTCACCGAAAGCCGTCATAAATTAGATAAATTTAGATTTGTAGATTTTGCTAAGAGAAGACCTGCAAATTAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.957

98.319

0.639

Multiple sequence alignment