Detailed information NTG0241048

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C7R96_RS16875
• Genome accession: NZ_CP028381
• Coordinates: 3173028..3174020 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RM10466
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3168028..3179020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7R96_RS16850 (C7R96_16850)	ygbN	3168683..3170047 (+)	1365	WP_000104439.1	GntP family transporter	-
C7R96_RS16855 (C7R96_16855)	-	3170086..3170322 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C7R96_RS16860 (C7R96_16860)	-	3170333..3171760 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C7R96_RS16865 (C7R96_16865)	-	3171760..3172353 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C7R96_RS16870 (C7R96_16870)	-	3172500..3172907 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
C7R96_RS16875 (C7R96_16875)	rpoS	3173028..3174020 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C7R96_RS16880 (C7R96_16880)	nlpD	3174083..3175177 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C7R96_RS16885 (C7R96_16885)	pcm	3175362..3175988 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C7R96_RS16890 (C7R96_16890)	surE	3175982..3176743 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C7R96_RS16895 (C7R96_16895)	truD	3176724..3177773 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C7R96_RS16900 (C7R96_16900)	ispF	3177770..3178249 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C7R96_RS16905 (C7R96_16905)	ispD	3178249..3178959 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=241048 C7R96_RS16875 WP_000081550.1 3173028..3174020(-) (rpoS) [Escherichia coli strain RM10466]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=241048 C7R96_RS16875 WP_000081550.1 3173028..3174020(-) (rpoS) [Escherichia coli strain RM10466]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715