Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C7R96_RS16580 Genome accession   NZ_CP028381
Coordinates   3117392..3117907 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain RM10466     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3112392..3122907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R96_RS16555 (C7R96_16555) ygaZ 3112791..3113528 (+) 738 WP_000445660.1 L-valine exporter subunit YgaZ -
  C7R96_RS16560 (C7R96_16560) ygaH 3113518..3113853 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C7R96_RS16565 (C7R96_16565) emrR 3113944..3114474 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C7R96_RS16570 (C7R96_16570) emrA 3114601..3115773 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C7R96_RS16575 (C7R96_16575) emrB 3115790..3117328 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C7R96_RS16580 (C7R96_16580) luxS 3117392..3117907 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C7R96_RS16585 (C7R96_16585) gshA 3118057..3119613 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C7R96_RS16590 (C7R96_16590) yqaA 3119686..3120114 (-) 429 WP_001287457.1 YqaA family protein -
  C7R96_RS16595 (C7R96_16595) yqaB 3120111..3120677 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C7R96_RS16625 (C7R96_16625) csrA 3122270..3122455 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=241045 C7R96_RS16580 WP_001130211.1 3117392..3117907(-) (luxS) [Escherichia coli strain RM10466]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=241045 C7R96_RS16580 WP_001130211.1 3117392..3117907(-) (luxS) [Escherichia coli strain RM10466]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment