Detailed information NTG0240972

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I3Y_RS17815
• Genome accession: NZ_CP028379
• Coordinates: 3416765..3417757 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O145 str. RM9872
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3411765..3422757

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3Y_RS17790 (I3Y_18145)	pphB	3413128..3413784 (+)	657	WP_001141343.1	protein-serine/threonine phosphatase	-
I3Y_RS17795 (I3Y_18150)	-	3413825..3414061 (-)	237	WP_000562979.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
I3Y_RS17800 (I3Y_18155)	-	3414072..3415499 (-)	1428	Protein_3343	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
I3Y_RS17805 (I3Y_18160)	-	3415499..3416092 (-)	594	WP_000767721.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
I3Y_RS17810 (I3Y_18165)	-	3416238..3416645 (+)	408	WP_001208062.1	MarR family transcriptional regulator	-
I3Y_RS17815 (I3Y_18170)	rpoS	3416765..3417757 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I3Y_RS17820 (I3Y_18175)	nlpD	3417820..3418914 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I3Y_RS17825 (I3Y_18180)	pcm	3419099..3419725 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I3Y_RS17830 (I3Y_18185)	surE	3419719..3420480 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I3Y_RS17835 (I3Y_18190)	truD	3420461..3421510 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
I3Y_RS17840 (I3Y_18195)	ispF	3421507..3421986 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I3Y_RS17845 (I3Y_18200)	ispD	3421986..3422696 (-)	711	WP_000246160.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=240972 I3Y_RS17815 WP_000081550.1 3416765..3417757(-) (rpoS) [Escherichia coli O145 str. RM9872]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=240972 I3Y_RS17815 WP_000081550.1 3416765..3417757(-) (rpoS) [Escherichia coli O145 str. RM9872]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715