Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I3Y_RS13995 Genome accession   NZ_CP028379
Coordinates   2626669..2628096 (+) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli O145 str. RM9872     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2621669..2633096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3Y_RS13955 (I3Y_14215) yeeW 2621853..2622047 (+) 195 WP_000988600.1 DUF5983 family protein -
  I3Y_RS13960 (I3Y_14220) - 2622093..2622173 (+) 81 Protein_2623 hypothetical protein -
  I3Y_RS13970 (I3Y_14230) - 2622662..2622844 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I3Y_RS13975 (I3Y_14235) tmaR 2622945..2623274 (-) 330 WP_000450409.1 DUF496 family protein -
  I3Y_RS13980 (I3Y_14240) yeeA 2623446..2624504 (-) 1059 WP_001200905.1 FUSC family protein -
  I3Y_RS13985 (I3Y_14245) sbmC 2624702..2625175 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  I3Y_RS13990 (I3Y_14250) dacD 2625294..2626460 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I3Y_RS13995 (I3Y_14255) sbcB 2626669..2628096 (+) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  I3Y_RS14000 (I3Y_14260) tsuB 2628139..2628366 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I3Y_RS14005 (I3Y_14265) tsuA 2628380..2629438 (-) 1059 WP_000492332.1 thiosulfate utilization transporter TsuA/YeeE -
  I3Y_RS14010 (I3Y_14270) plaP 2629617..2630975 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I3Y_RS14015 (I3Y_14275) yoeI 2630965..2631027 (-) 63 WP_010723108.1 membrane protein YoeI -
  I3Y_RS14020 (I3Y_14280) yeeY 2631242..2632171 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I3Y_RS14025 (I3Y_14285) yeeZ 2632217..2633041 (-) 825 WP_000754755.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=240960 I3Y_RS13995 WP_000980539.1 2626669..2628096(+) (sbcB) [Escherichia coli O145 str. RM9872]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=240960 I3Y_RS13995 WP_000980539.1 2626669..2628096(+) (sbcB) [Escherichia coli O145 str. RM9872]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGTTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581