Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A17_RS06175 Genome accession   NZ_CP028372
Coordinates   1168488..1168982 (+) Length   164 a.a.
NCBI ID   WP_126655069.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain huA17     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1163488..1173982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A17_RS06160 (A17_01245) - 1164874..1166052 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  A17_RS06165 (A17_01246) gpsA 1166062..1166958 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  A17_RS06170 (A17_01247) gatB 1166955..1168373 (-) 1419 WP_002858123.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  A17_RS06175 (A17_01248) luxS 1168488..1168982 (+) 495 WP_126655069.1 S-ribosylhomocysteine lyase Regulator
  A17_RS06180 (A17_01249) - 1169294..1170286 (+) 993 WP_002858100.1 isopenicillin N synthase family oxygenase -
  A17_RS06185 (A17_01250) - 1170297..1171067 (+) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  A17_RS06190 (A17_01251) metE 1171079..1173343 (+) 2265 WP_040966618.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18239.21 Da        Isoelectric Point: 6.6314

>NTDB_id=240912 A17_RS06175 WP_126655069.1 1168488..1168982(+) (luxS) [Campylobacter jejuni subsp. jejuni strain huA17]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKSDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=240912 A17_RS06175 WP_126655069.1 1168488..1168982(+) (luxS) [Campylobacter jejuni subsp. jejuni strain huA17]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGAGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTCGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTACCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701