Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CHR53_RS20370 Genome accession   NZ_CP022572
Coordinates   4146557..4148971 (-) Length   804 a.a.
NCBI ID   WP_127488142.1    Uniprot ID   A0A3Q9QUE8
Organism   Neobacillus mesonae strain H20-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4141557..4153971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR53_RS20350 (CHR53_20435) - 4144507..4145598 (-) 1092 WP_127488140.1 AI-2E family transporter -
  CHR53_RS20355 (CHR53_20440) - 4145682..4145816 (-) 135 WP_084797633.1 YrzQ family protein -
  CHR53_RS20360 (CHR53_20445) - 4145852..4146043 (-) 192 WP_066385757.1 hypothetical protein -
  CHR53_RS20365 (CHR53_20450) - 4146055..4146525 (-) 471 WP_066385759.1 PRC-barrel domain-containing protein -
  CHR53_RS20370 (CHR53_20455) recD2 4146557..4148971 (-) 2415 WP_127488142.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CHR53_RS20375 (CHR53_20460) - 4149006..4149656 (-) 651 WP_066385827.1 tetratricopeptide repeat protein -
  CHR53_RS20380 (CHR53_20465) - 4149773..4151149 (-) 1377 WP_066385832.1 amino acid permease -
  CHR53_RS20385 (CHR53_20470) - 4151226..4152515 (-) 1290 WP_127488144.1 dihydrolipoamide acetyltransferase family protein -
  CHR53_RS20390 (CHR53_20475) - 4152528..4153544 (-) 1017 WP_127488146.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90788.05 Da        Isoelectric Point: 5.0052

>NTDB_id=240888 CHR53_RS20370 WP_127488142.1 4146557..4148971(-) (recD2) [Neobacillus mesonae strain H20-5]
MANQESLDLFGEQGRFIKGRPIVTIFHNEQNLYTVLRIRVDETNHTYHDKEAVITGYFPKVYEQETYIFYGEFKEHPKFG
LQFQANHFRKDMPQSKQGIVAYLSGEMFKGIGKKTAENIVETLGEDAISKILNQPSLLDSVPKLPPDKAKLLYDTLMEHQ
GLEQIMIALNQFGFGPQLSMRIYQAYKEETLSIIEKNPYKLVEDVEGIGFGRADELGYQLGMTGNHPDRIKAGCLYMLEN
ECMQTGHVYMQTEDLLERVKALLEENKRDQIDYLNISNEIIKLEEEGKIIGEEKRVYLPSLFYAEKGLVTNIQRILKQTE
YKDQFPESEFLLALGGLEERLGVQYAPTQREAIQTALMSPMMILTGGPGTGKTTVIKGIVELYGELHGCSLEIKDYHKKD
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGFNGTEGFEREDTSPLEGKILIVDETSMLDIWLANQLFKALPENIQV
ILVGDEDQLPSVGPGQVLKDLLHSERIPTVKLTDIYRQAEGSSIIELAHEIKKGRLPADVTIKQADRSFIKCSTAQVAQV
VEKVALNAKTKGYSAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPDGKRKEIAFGEVKYRIGDKVLQLVNQPESNVFNG
DIGEIISIIYAKENTEKQDMIYISYEGNEVEYTRQDLTQITHAYCCSVHKSQGSEFPIVILPVTRSYYRMLQRNLIYTAI
TRSKQSLILCGEPDALKMGVERADESKRLTTLSEKLQEAIPPMNSKVEQSAKASAEMSLEEELMQVNPMIGMENVTPYDF
MVND

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=240888 CHR53_RS20370 WP_127488142.1 4146557..4148971(-) (recD2) [Neobacillus mesonae strain H20-5]
ATGGCAAATCAAGAATCATTGGATTTATTTGGGGAACAAGGGCGGTTTATAAAAGGAAGACCGATTGTGACCATTTTTCA
TAATGAACAGAACCTTTATACCGTTCTAAGAATCCGCGTTGATGAAACTAATCATACATATCATGATAAAGAAGCGGTCA
TTACCGGCTATTTTCCGAAAGTTTACGAGCAAGAAACCTATATTTTTTACGGCGAATTTAAGGAGCACCCAAAATTCGGC
CTGCAATTTCAAGCGAATCATTTTCGCAAGGATATGCCGCAGTCAAAGCAGGGGATTGTTGCCTATTTGTCAGGGGAAAT
GTTTAAAGGGATCGGTAAGAAAACGGCCGAAAATATTGTCGAAACATTAGGGGAAGACGCCATCTCCAAAATCCTTAATC
AGCCTTCGCTGCTCGATTCGGTTCCAAAGCTCCCTCCCGATAAAGCGAAATTATTATACGATACATTGATGGAGCATCAA
GGCCTTGAACAGATTATGATTGCCCTCAATCAATTTGGCTTTGGTCCGCAGCTGTCCATGCGAATATATCAAGCATATAA
AGAGGAAACGCTAAGCATCATTGAAAAGAATCCTTATAAGCTTGTCGAGGATGTTGAAGGAATTGGTTTTGGTCGGGCCG
ATGAGCTCGGCTACCAGCTGGGAATGACCGGAAACCATCCCGACCGAATAAAAGCAGGCTGTTTATATATGTTAGAAAAC
GAATGTATGCAAACCGGACATGTTTACATGCAAACAGAGGATTTACTTGAACGTGTAAAAGCGCTGCTTGAAGAAAATAA
ACGTGATCAAATTGATTATTTGAATATTTCTAATGAGATCATCAAGCTTGAAGAAGAAGGAAAGATCATTGGTGAAGAAA
AAAGGGTTTATTTGCCGTCGTTATTTTATGCGGAAAAGGGTTTGGTAACAAATATTCAGCGCATTTTAAAACAAACGGAA
TATAAAGACCAATTTCCTGAATCGGAATTTTTGCTCGCTTTAGGCGGTTTAGAGGAAAGGCTGGGTGTGCAATATGCACC
GACGCAGAGGGAAGCAATTCAAACTGCGCTCATGTCGCCGATGATGATTTTAACCGGCGGACCTGGCACAGGTAAAACAA
CTGTCATTAAAGGGATTGTGGAGCTTTATGGGGAATTGCACGGCTGTTCGTTAGAAATAAAAGACTATCATAAAAAAGAT
GAGCCGTTTCCCTTCTTACTGGCAGCTCCTACCGGCCGGGCGGCTAAAAGAATGAGCGAATCGACAGGGCTTCCGGCCGT
TACAATCCACCGGCTGCTCGGCTTTAACGGAACAGAAGGCTTTGAGCGGGAAGATACGAGTCCGTTAGAAGGAAAAATTT
TAATTGTTGATGAAACCTCCATGCTTGATATTTGGCTGGCCAATCAATTGTTTAAGGCCCTGCCTGAGAATATCCAAGTC
ATTCTAGTTGGTGACGAGGATCAGCTGCCATCGGTCGGTCCGGGGCAGGTTTTAAAGGATTTGCTTCATTCAGAACGGAT
TCCAACGGTAAAGCTGACAGATATTTACCGTCAGGCAGAAGGATCCTCGATCATTGAGCTTGCCCATGAAATTAAAAAAG
GACGGCTGCCTGCTGATGTGACAATAAAGCAGGCGGATCGTTCGTTTATTAAATGTTCAACTGCACAGGTGGCACAAGTG
GTGGAGAAGGTTGCCTTAAATGCCAAAACCAAGGGGTATTCAGCTAAGGATATTCAAGTGCTTGCCCCGATGTACCGAGG
ACCTGCAGGAATTGACCGCTTAAACGTATTATTGCAGGAAATCTTTAATCCTAATCCTGACGGCAAACGGAAGGAAATTG
CTTTTGGCGAAGTGAAGTACAGGATTGGCGACAAGGTGCTCCAGCTAGTAAACCAGCCGGAGAGTAACGTATTTAACGGG
GATATCGGTGAAATAATATCTATTATCTATGCCAAGGAGAATACCGAAAAGCAGGATATGATTTATATTTCTTATGAAGG
AAATGAAGTCGAGTATACGAGGCAGGATTTAACTCAAATTACTCATGCCTATTGCTGCTCAGTTCATAAATCTCAAGGCA
GTGAATTTCCGATTGTCATCCTTCCCGTCACGAGAAGCTATTACCGCATGCTACAGAGGAATTTGATCTATACAGCGATT
ACCAGAAGTAAGCAGTCGTTGATTTTATGCGGTGAACCGGATGCGCTTAAGATGGGCGTTGAACGGGCAGATGAATCGAA
GCGGTTAACGACATTATCTGAAAAACTTCAGGAAGCTATTCCACCAATGAATAGCAAGGTTGAACAGAGCGCAAAAGCGT
CTGCAGAGATGTCCTTAGAAGAAGAATTAATGCAGGTAAATCCGATGATTGGGATGGAAAACGTTACACCTTATGATTTT
ATGGTAAATGACTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-656)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-554)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9QUE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.965

98.756

0.612

Multiple sequence alignment