Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CHR53_RS19380 Genome accession   NZ_CP022572
Coordinates   3968759..3970447 (-) Length   562 a.a.
NCBI ID   WP_066385297.1    Uniprot ID   A0A3Q9QWP4
Organism   Neobacillus mesonae strain H20-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3963759..3975447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR53_RS19360 (CHR53_19445) - 3965059..3965307 (+) 249 WP_066385289.1 DUF2627 domain-containing protein -
  CHR53_RS19365 (CHR53_19450) - 3965319..3966047 (-) 729 WP_066385295.1 glycerophosphodiester phosphodiesterase -
  CHR53_RS19370 (CHR53_19455) spo0A 3966262..3967056 (-) 795 WP_066385296.1 sporulation transcription factor Spo0A -
  CHR53_RS19375 (CHR53_19460) spoIVB 3967350..3968636 (-) 1287 WP_127488017.1 SpoIVB peptidase -
  CHR53_RS19380 (CHR53_19465) recN 3968759..3970447 (-) 1689 WP_066385297.1 DNA repair protein RecN Machinery gene
  CHR53_RS19385 (CHR53_19470) argR 3970464..3970913 (-) 450 WP_066385299.1 transcriptional regulator ArgR -
  CHR53_RS19390 (CHR53_19475) - 3971048..3971884 (-) 837 WP_066385305.1 TlyA family RNA methyltransferase -
  CHR53_RS19395 (CHR53_19480) dxs 3971888..3973783 (-) 1896 WP_066400747.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CHR53_RS19400 (CHR53_19485) - 3974023..3974916 (-) 894 WP_066385306.1 polyprenyl synthetase family protein -
  CHR53_RS19405 (CHR53_19490) - 3974920..3975153 (-) 234 WP_066385312.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63456.41 Da        Isoelectric Point: 5.0474

>NTDB_id=240883 CHR53_RS19380 WP_066385297.1 3968759..3970447(-) (recN) [Neobacillus mesonae strain H20-5]
MLAELSIKNFAIIENLSISFEKGLSVLTGETGAGKSIIIDAIHLLTGGRGSAEFVRHGKDKAEIEGLFQIDEIGHPVYKK
ALEFGIEIEEGMVVLRRDISRTGKSVCRINGKLVTIAVLREIGAALVDIHGQHEHQELMDETRHLPLLDQFGAEEIAASM
EEYRQVFHRFEQTQNRLKALSENDQQMAHRLDLILFQFDEIQKADLKLHEDEELYEEKQKLSNFEKIYEALQLSFNALHG
DQKGLDWVGMVMGHLEDAAAIDGAYKEISEAVANCFYQLEDAARTLRNELDVLEFDPQRLNEIEDRLNEINQLKRKYGKT
IQEILEYAAKIEEEIETIQNKETHIDELEKEIASIKKDLTLEAKQLTALRQKWAEKLTGLIHKELKELYMEKTVFNIQIT
SENDHFSKYGADHVEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIY
KVALDSQVLCISHLPQVAAMADTHLFISKTVKDGRTSTAVTPLTDQEKIKEIGRMISGVEITDLTKQHAEELLQLAVKTK
KN

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=240883 CHR53_RS19380 WP_066385297.1 3968759..3970447(-) (recN) [Neobacillus mesonae strain H20-5]
TTGCTAGCTGAACTTTCAATCAAAAACTTTGCCATTATCGAAAACCTGTCAATCTCCTTTGAAAAAGGTCTTTCGGTTCT
GACTGGAGAAACCGGAGCGGGAAAGTCCATAATCATCGATGCGATTCATTTATTGACAGGTGGCAGGGGGTCGGCTGAGT
TTGTACGACATGGTAAAGATAAGGCAGAGATAGAAGGTTTATTTCAAATTGATGAAATTGGTCATCCCGTGTATAAGAAA
GCATTGGAATTTGGTATCGAAATAGAAGAAGGTATGGTTGTATTACGTCGTGATATTTCCCGCACCGGAAAAAGCGTATG
CCGCATAAATGGGAAATTAGTCACGATAGCGGTGCTTCGAGAAATAGGTGCGGCCCTTGTTGATATTCACGGCCAGCATG
AACACCAGGAACTAATGGATGAAACACGACATCTTCCATTGCTCGACCAATTTGGTGCTGAAGAGATTGCCGCATCAATG
GAAGAATACCGCCAAGTCTTTCACCGGTTTGAACAAACGCAAAATAGGCTTAAGGCTCTAAGTGAAAATGACCAGCAAAT
GGCTCATAGGCTAGATTTAATTCTATTTCAGTTTGACGAAATTCAAAAAGCGGATTTAAAGCTGCATGAGGATGAGGAGC
TTTATGAAGAAAAGCAGAAACTGTCTAATTTCGAAAAAATTTATGAAGCACTTCAATTAAGTTTTAACGCCTTGCACGGG
GACCAAAAAGGGCTTGACTGGGTCGGGATGGTCATGGGGCATTTAGAGGATGCAGCTGCAATAGACGGGGCATATAAGGA
AATCTCCGAAGCGGTAGCCAATTGCTTTTATCAGTTAGAGGATGCGGCAAGGACACTAAGAAATGAATTAGACGTTTTGG
AATTTGATCCGCAAAGATTAAATGAAATAGAAGACCGTTTGAATGAAATTAATCAATTAAAACGGAAATATGGGAAAACG
ATTCAGGAAATATTGGAATATGCGGCCAAAATTGAAGAAGAAATTGAGACGATTCAAAATAAAGAAACGCATATCGATGA
GTTGGAAAAAGAAATAGCTTCCATTAAAAAGGATTTAACCCTCGAGGCGAAACAGTTGACAGCACTTCGCCAAAAATGGG
CAGAAAAGCTCACAGGGCTGATACATAAAGAATTAAAAGAATTGTACATGGAAAAAACGGTTTTTAATATTCAAATTACA
TCAGAGAATGACCATTTTTCTAAATATGGGGCGGATCATGTGGAGTTTTATATTTCCACCAATCCTGGTGAACCGCTAAA
ACCTTTATCGAAAGTGGCGTCCGGCGGTGAATTGTCGCGGATTATGCTGGCGTTAAAAAGTATTTTTTCCAAGCATCAAG
GAGTTACCTCAATTATTTTTGATGAGGTGGATACTGGGGTAAGCGGCAGGGTTGCCCAAGCGATTGCTGAAAAAATTTAT
AAAGTAGCACTCGATTCACAAGTATTATGTATTTCACATTTGCCTCAAGTAGCGGCAATGGCCGATACTCATTTGTTTAT
TTCTAAGACAGTCAAAGATGGCCGGACTTCAACTGCGGTTACACCGTTAACCGATCAAGAAAAAATTAAAGAAATCGGGC
GAATGATTTCCGGAGTGGAAATAACCGATTTAACCAAGCAGCATGCAGAGGAATTATTGCAATTAGCAGTAAAAACTAAA
AAAAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9QWP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.672

100

0.63

Multiple sequence alignment