Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   CHR53_RS08295 Genome accession   NZ_CP022572
Coordinates   1722127..1723950 (+) Length   607 a.a.
NCBI ID   WP_127486136.1    Uniprot ID   A0A3T0HVY3
Organism   Neobacillus mesonae strain H20-5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 1717127..1728950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR53_RS08275 (CHR53_08310) spxA 1717708..1718103 (+) 396 WP_066395071.1 transcriptional regulator SpxA -
  CHR53_RS08280 (CHR53_08315) mecA 1718448..1719113 (+) 666 WP_127486130.1 adaptor protein MecA -
  CHR53_RS08285 (CHR53_08320) cls 1719188..1720699 (+) 1512 WP_127486132.1 cardiolipin synthase -
  CHR53_RS08290 (CHR53_08325) - 1720784..1721986 (+) 1203 WP_164745634.1 competence protein CoiA family protein -
  CHR53_RS08295 (CHR53_08330) pepF 1722127..1723950 (+) 1824 WP_127486136.1 oligoendopeptidase F Regulator
  CHR53_RS28090 - 1724364..1724522 (+) 159 WP_164745635.1 hypothetical protein -
  CHR53_RS08300 (CHR53_08335) - 1724536..1725438 (-) 903 WP_127486138.1 nuclease-related domain-containing protein -
  CHR53_RS08305 (CHR53_08345) - 1726817..1727701 (-) 885 WP_066395087.1 ClpXP adapter SpxH family protein -
  CHR53_RS08310 (CHR53_08350) - 1727682..1728095 (-) 414 WP_127486140.1 globin -
  CHR53_RS08315 (CHR53_08355) - 1728270..1728860 (-) 591 WP_127486142.1 CYTH domain-containing protein -

Sequence


Protein


Download         Length: 607 a.a.        Molecular weight: 69740.27 Da        Isoelectric Point: 4.9043

>NTDB_id=240872 CHR53_RS08295 WP_127486136.1 1722127..1723950(+) (pepF) [Neobacillus mesonae strain H20-5]
MTNESAVKSLPARSELPAQDTWKLEDIFANDEEWEKEFQAVKGLIPGIKEYEGKLGESADTFYKALQCEDQLLERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQAASALAFIVPEILSIDESKVSSFLNEKPELKLYEHALEEINLQRPHVLSAE
QEALLAEAGEVMDASSNTFGMLNNADLEFPSIKDENGEEVEITHGRYIRFLESGDQRVRHDAFKAVYQTYGKFKNTFSST
LSGNVKKNNFNARVRKYDSARHAALSANNIPESVYDNLVNAVNENLHLLHRYVKLRKKVLGLNELHMYDLYTPLVKDVKM
EIKYEEAKDLVLKGLVPLGEEYTKVLQEGFENRWVDVHENKGKRSGAYSSGAFGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTEIYYELNKKYFGEEDIVMDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIDF
LSAGSSDYPIEVLKKAGVDMTSADPVKNALKVFEEKLGELEQLLVHQ

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=240872 CHR53_RS08295 WP_127486136.1 1722127..1723950(+) (pepF) [Neobacillus mesonae strain H20-5]
ATGACAAATGAATCGGCTGTAAAGTCACTACCGGCACGAAGTGAACTTCCCGCCCAGGATACTTGGAAATTAGAGGATAT
TTTTGCTAACGATGAAGAATGGGAAAAAGAATTTCAAGCAGTAAAAGGTCTAATCCCGGGAATTAAGGAATATGAAGGGA
AACTCGGTGAAAGCGCAGATACATTTTATAAGGCGTTACAGTGTGAAGACCAGCTGCTTGAGCGTATTGGCAAGCTATAT
ACATATTCACATATGAGATATGACCAGGATACCACCAATTCCTTTTACCAAGGCTTAGATGACCGGATGAAAAATCTTTA
TTCGCAGGCTGCCAGCGCGTTAGCCTTTATCGTTCCGGAAATACTCTCGATTGATGAAAGTAAGGTTTCCAGCTTTTTGA
ATGAAAAGCCGGAATTAAAGCTTTATGAGCATGCTCTTGAGGAAATTAATCTCCAGCGGCCGCATGTCTTAAGTGCTGAG
CAGGAAGCACTTCTAGCGGAAGCAGGCGAAGTAATGGATGCCTCCAGCAACACGTTTGGGATGCTCAATAATGCGGATTT
GGAGTTTCCCTCCATAAAGGATGAAAACGGTGAAGAGGTGGAAATTACCCACGGACGTTATATCCGCTTCCTGGAAAGTG
GTGATCAACGGGTCCGTCATGATGCCTTTAAAGCTGTTTATCAAACATATGGAAAGTTTAAAAACACGTTTTCAAGTACT
TTAAGCGGCAATGTTAAAAAGAATAATTTCAATGCAAGAGTACGGAAATACGACTCAGCCAGACATGCAGCACTATCGGC
GAATAATATTCCAGAAAGCGTCTATGACAACCTTGTGAATGCGGTTAATGAAAACCTGCATTTACTGCACCGCTATGTGA
AGCTGCGGAAAAAAGTTTTAGGTTTAAACGAATTGCATATGTACGATTTATACACACCGTTGGTAAAAGACGTAAAGATG
GAAATTAAGTATGAAGAAGCAAAAGATTTGGTCCTTAAAGGACTTGTTCCATTAGGAGAAGAATATACAAAGGTTCTACA
AGAGGGGTTTGAAAACCGCTGGGTAGATGTTCATGAAAATAAAGGAAAGCGCAGCGGGGCTTATTCTTCAGGGGCTTTTG
GCACCAACCCATATATCTTAATGAACTGGCATGATAATGTTAATAATTTATTTACACTTGCACATGAATTCGGCCACTCA
GTTCATAGCTACTATACACGAAAGTCACAGCCATACCCGTATGGAAACTATTCCATATTTGTTGCGGAAGTTGCTTCAAC
GTGCAATGAAGCTTTGCTAAATGATTACTTATTAAAAACGATAGATGACGAGCAGAAGCGGATTTATCTTTTAAACCATT
ATTTAGAAGGCTTCCGCGGCACGGTGTTCCGTCAAACTATGTTTGCTGAATTTGAACATTTAATTCATCAAAAAGCCCAA
AACAACGAAGCGTTAACAGCTGACTCGTTAACAGAAATTTATTATGAGTTAAATAAAAAGTACTTCGGTGAAGAGGATAT
TGTAATGGATGAGGAAATCGGCTTGGAATGGGCACGAATTCCGCATTTCTATTACAATTATTATGTATACCAATATGCTA
CAGGCTTTAGTGCAGCCACTGCATTAAGCAAGCAAATCTTGGAAGAAGGCGAACCGGCAGTCAAACGCTATATAGACTTT
CTAAGTGCCGGAAGCTCAGATTATCCGATTGAAGTTCTGAAAAAAGCAGGCGTGGATATGACCAGCGCCGACCCAGTTAA
AAATGCATTGAAGGTGTTTGAAGAAAAACTTGGGGAATTGGAACAATTATTAGTACATCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A3T0HVY3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

97.858

0.488


Multiple sequence alignment