Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C6376_RS16270 Genome accession   NZ_CP028369
Coordinates   3641621..3643354 (-) Length   577 a.a.
NCBI ID   WP_107444079.1    Uniprot ID   -
Organism   Streptomyces sp. P3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3636621..3648354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6376_RS16260 (C6376_16250) - 3638251..3639549 (+) 1299 WP_254075959.1 RNA polymerase sigma factor -
  C6376_RS16265 (C6376_16255) rcrQ 3639693..3641621 (-) 1929 WP_107444078.1 ABC transporter ATP-binding protein Regulator
  C6376_RS16270 (C6376_16260) rcrP 3641621..3643354 (-) 1734 WP_107444079.1 ABC transporter ATP-binding protein Regulator
  C6376_RS16275 (C6376_16265) - 3643518..3644972 (-) 1455 WP_107444080.1 FGGY-family carbohydrate kinase -
  C6376_RS16280 (C6376_16270) - 3645077..3645382 (-) 306 WP_057574869.1 hypothetical protein -
  C6376_RS43840 - 3646157..3646303 (+) 147 WP_159083210.1 hypothetical protein -
  C6376_RS46395 - 3646746..3646925 (-) 180 WP_367881088.1 DUF3459 domain-containing protein -
  C6376_RS16305 (C6376_16295) - 3647218..3647376 (-) 159 WP_254075960.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62799.96 Da        Isoelectric Point: 6.1928

>NTDB_id=240858 C6376_RS16270 WP_107444079.1 3641621..3643354(-) (rcrP) [Streptomyces sp. P3]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVEGDTGYILTFGGVMIAVSLAQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTDLTDISLKTGNMLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGQMQIGDLTAFLAYLMQIVMSVMMATFMFMQVPRAEVCAERIQEVLQTSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLKAIELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVAVD
EVDPVLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVSKLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGTGTHRELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=240858 C6376_RS16270 WP_107444079.1 3641621..3643354(-) (rcrP) [Streptomyces sp. P3]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCGCTCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGCGTCGTCGAGGGAGACACCGGATACA
TCCTGACGTTCGGCGGCGTGATGATCGCCGTCTCGCTGGCGCAGGTCGTGTGCAACATCGGCGCCGTCTACTACGGCGCC
AGGACCGCTTCCGCCCTCGGCCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGGGAGGTCGG
CCACTTCGGCGCACCCTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGAGGCATCGTGCTGGCGCTCGGGCTGGACGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTCGTGCCGACGCTGGGCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCCATGCA
GGTGAAGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTGCGGGACG
AGTACGAGCAGCAGCGGTTCCGGAAGGCCAACACGGACCTCACGGACATCTCGCTGAAGACCGGCAACATGCTGGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCCTCGATCGCGGTGGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
GCAGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACGTTCA
TGTTCATGCAGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGCAGACCTCGTCCTCCGTGGTTCCG
CCGGTGGCGCCCGTCACCGAGCTGCGGCGGCACGGGCACCTGGAGATCAGAGGGGCCGGGTTCCGTTACCCCGGCGCCGA
GGAGCCCGTCCTGAAGGCCATCGAGCTGGTGGCCCGCCCCGGTGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTCCTCGGGCTGGTGCCCCGGCTGTTCGACGCCACCGAGGGCGAGGTGCTCGTGGACGGGGTCGCCGTCGAC
GAGGTCGACCCGGTGCTGCTGGCGCGGACCGTCGGTCTGGTGCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTCGCCAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TCAGCAAGCTGGAGAACGGCCTCGACTCTCCCATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGCCAGCGGCTG
GCGATCGCCCGCACCCTCGTGCAGCGGCCGGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTCGACTACGCCACCGA
CGCGGCGCTTCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACGGGCACCCACCGCGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.687

100

0.388